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<h3>
Rebecca N. Palmer pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/48c2b38f41b49c57434abddedf474edbdcb3aa6d">48c2b38f</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-08T19:36:27+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 6.12.3</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#fcc8b73a70c3f6bccb6382487e59d0069f657074">
.github/workflows/conventional-prs.yml
</a>
</li>
<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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</li>
<li class="file-stats">
<a href="#271b54d579b58b0097c7c56b8ab060c6e3a67b4f">
docs/requirements.txt
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</li>
<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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</li>
<li class="file-stats">
<a href="#a64f4e86841a3aed0cd5f5ec9d71431086ea0014">
docs/tutorial/advanced.rst
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</li>
<li class="file-stats">
<a href="#cf170f1aad8eab1ea8f50709422e4eae4ebaf604">
docs/tutorial/short.rst
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</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#a3f7d8116d97086f34b95ab949c6c99128c6713f">
snakemake/benchmark.py
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<li class="file-stats">
<a href="#959b717a57676faf331e51a5fe763a00dea0032d">
snakemake/common/__init__.py
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<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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</li>
<li class="file-stats">
<a href="#2eefc56ce2f64fa1b7c1a3a535061a326d1703e8">
snakemake/deployment/containerize.py
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</li>
<li class="file-stats">
<a href="#7610d24f21cc1508e60687b4a0c7e940a75ca358">
snakemake/executors/__init__.py
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<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
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</li>
<li class="file-stats">
<a href="#8a638600ab5121801770ac0563c30576f0b2032b">
snakemake/modules.py
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<li class="file-stats">
<a href="#87b26159067ade1d989921cb3240bfabece3aea0">
snakemake/notebook.py
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</li>
<li class="file-stats">
<a href="#d70c11793454d64a7b2d77ced116226d2f13378e">
snakemake/parser.py
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</li>
<li class="file-stats">
<a href="#66a73d9dd46eb8e71f0039a18d36dbd78aea7977">
snakemake/script.py
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</li>
<li class="file-stats">
<a href="#890eb9a72c661585e32094a5a93e483c1b1a8c82">
snakemake/shell.py
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</li>
<li class="file-stats">
<a href="#21710de7772a600526d9fb71e1e0d04be649a050">
snakemake/sourcecache.py
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</li>
<li class="file-stats">
<a href="#7f9a0b46ce55f8a717428312094c6bfdd93b8120">
snakemake/unit_tests/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#cb9e107597e441fb1c0d61663359d9cf1dbfe04d">
snakemake/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#18051d6fa83e6daf8ee96c3f5093a8d27095f4fa">
tests/common.py
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</li>
<li class="file-stats">
<a href="#844328936f855ed8868427025da9923ce5b6d109">
<span class="new-file">
+
tests/test_checkpoint_allowed_rules/Snakefile
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</a>
</li>
<li class="file-stats">
<a href="#3a2595761c2474111c437acfbb2a2de6c8db0af5">
<span class="new-file">
+
tests/test_checkpoint_allowed_rules/expected-results/b.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5f162ded4254ca77c2f4b087a42a79b2caa7995">
<span class="new-file">
+
tests/test_checkpoint_allowed_rules/qsub
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ff70f26a1060834194713305eeb7ce018e4ec38">
<span class="new-file">
+
tests/test_config_merging/Snakefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5989610d29ecca26991c3a4ea74d7b4b89cf2e4">
<span class="new-file">
+
tests/test_config_merging/config_cmdline_01.yaml
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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