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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/19c5ccadc48efce138ac89caff5f8a9bcba62cba">19c5ccad</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-01-16T21:58:42+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.10a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/df449d09bd776ddab5e9b78034303e25058704dc">df449d09</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-01-16T21:58:44+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.10a+dfsg'
Update to upstream version '2.7.10a+dfsg'
with Debian dir c831772c398f1667a181a8af401ebfa02ea2bb64</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/d2842201ddd50fbd7285caeafb596a4d07485ba5">d2842201</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-01-16T22:05:38+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/057d81792f21f6ab96e0576c2ed929e5e9e9e246">057d8179</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-01-16T22:19:18+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip seeking GIT_BRANCH_COMMIT_DIFF
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/615d35fd7d791f5ecec584ec6142282fc70c6aad">615d35fd</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-01-16T22:19:18+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>30 changed files:</h4>
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#5daba7e44eda2850e9cdb215d915e62bf69a3420">
debian/patches/do-not-enforce-avx2.patch
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<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
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<li class="file-stats">
<a href="#dff95bfe725929ee1dea7525100f4f6d09bd9ba6">
debian/patches/mathRoutinesNotInScope.patch
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<li class="file-stats">
<a href="#fc82e800145a06edffd37acdd7c0cbc42c3766d0">
debian/patches/mips_shm_noreserve.patch
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<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
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<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
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<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
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<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
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<li class="file-stats">
<a href="#157cd6d9047e6c04e2c099a71f167a5214eba375">
extras/doc-latex/convertParDefToLatexTable.awk
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<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
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<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
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<li class="file-stats">
<a href="#550422804a1bf53947b40b7fbff47e6600f183ca">
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extras/parameters/ENCODE.txt
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<a href="#a5d93d28ecd76e5075d44c9a531876ffe87b50de">
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extras/scripts/soloCompareMtx.awk
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<a href="#e0daa8eb85c2b52c392d60d41d487cb78d9029a2">
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extras/scripts/soloCountMatrixFromBAM.awk
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<a href="#ca602b34e72ef6af6afd3c45a3a7a5d3cf3e92e6">
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extras/scripts/soloExtractFiltCells.awk
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<li class="file-stats">
<a href="#2b32580fd79648acafc9857e684902b460028bd6">
extras/scripts/calcUMIperCell.awk
→
extras/scripts/soloUMIperCell.awk
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<li class="file-stats">
<a href="#f749ae2572ee7550c453bedea9669f52ff7c1d99">
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extras/tests/scripts/checkCellReadsStats.awk
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<li class="file-stats">
<a href="#8389344282198a8796bd1f11602a34144cdda6da">
<span class="new-file">
+
extras/tests/scripts/checkCellReadsStats_vsBAM.awk
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<a href="#4f49f4621e6a6d232de039a67c5f09643c843e90">
<span class="new-file">
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extras/tests/scripts/checkCellReadsStats_vsMatrix.awk
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<li class="file-stats">
<a href="#385d57a3ccf42a0b7462635b147b385a25e91797">
source/Genome.cpp
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<a href="#a0b6c92785c5892df94b89d21ead0dc460541d74">
source/IncludeDefine.h
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<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
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<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
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<li class="file-stats">
<a href="#09b38547a28087b813616bd2a7334493c3862c48">
source/Parameters.h
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<li class="file-stats">
<a href="#47400d5368eac693c6bfbf23c7c88692d933b447">
source/ParametersClip_initialize.cpp
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<h5>The diff was not included because it is too large.</h5>
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