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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/drop-seq">Debian Med / drop-seq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/52492edbe063f4336de7414f7114cebc6871ebaf">52492edb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:24:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62">06561ca1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:25:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/2d6ab431feb9f6a076e99a10249d57229b7c924d">2d6ab431</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:27:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.1+dfsg'
Update to upstream version '2.5.1+dfsg'
with Debian dir 33709cc1f24224ccfaad2821c7da8ab49983d97b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/fafa4f58ccf374b890fdea0efab334a4b378ea87">fafa4f58</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:29:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing build dependency on dh addon.
Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/fe0d97714c61f48777c653fcce3fa8ffd85f68f2">fe0d9771</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:45:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream has applied biojava4 patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7">6516ceee</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T16:52:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#ea812c2fa082332e59c008510bfb5a900e310037">
<span class="deleted-file">
−
debian/patches/biojava4_packages.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#e417d87785a703d5c8bb1cc5e82cddfae8efe265">
src/ant/defs.xml
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<a href="#d104681227a8788b9d9d21de2ce5adf16aba2b31">
src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java
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<li class="file-stats">
<a href="#85e6217b39284ad8b07cbbd8125a9676e9da87cb">
src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java
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<li class="file-stats">
<a href="#d02c03bf153c3ab136486a0fa6cca18cb1d5803f">
src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java
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<a href="#bf66897dbc44295e35876f589c838511ac83323b">
src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java
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<a href="#95c526084aa9ad658d7b25254d5fbfbe5332ccd9">
src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java
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<a href="#d944370ae2e28822d45ecbf14db2258019f68621">
src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java
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<a href="#f2ddb40fbd831e2acaed3990bb9ba8492f7139d7">
src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java
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<a href="#fe1030726e5488d620ac0704e82f64e568a5bbaf">
src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java
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<li class="file-stats">
<a href="#3dfd83b9458dbd8e0506d390375ab0d1d27c99f1">
src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java
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<li class="file-stats">
<a href="#0c6697ef52f14a2739123f0abddc573b0efce8bb">
src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java
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<a href="#8b7c38c848dee0a79759e28bd6c3519a6d5667e3">
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java
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<a href="#fc65f2c660264891111d7908f753d7b22c05c5cd">
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java
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<a href="#beb59feba939c25200173ef01c65f9a27165fc7e">
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java
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<a href="#3f31972cfc86392b5447047bd1bda55c9ee3ef9c">
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java
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<h5>The diff was not included because it is too large.</h5>
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