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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/drop-seq">Debian Med / drop-seq</a>
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<h4>
Commits:
</h4>
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<li>
<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62">06561ca1</a></strong>
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<span>by Andreas Tille</span>
<i>at 2022-01-16T16:25:01+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.1+dfsg</pre>
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<h4>26 changed files:</h4>
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<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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<li class="file-stats">
<a href="#e417d87785a703d5c8bb1cc5e82cddfae8efe265">
src/ant/defs.xml
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<li class="file-stats">
<a href="#d104681227a8788b9d9d21de2ce5adf16aba2b31">
src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java
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<li class="file-stats">
<a href="#85e6217b39284ad8b07cbbd8125a9676e9da87cb">
src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java
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<li class="file-stats">
<a href="#d02c03bf153c3ab136486a0fa6cca18cb1d5803f">
src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java
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<li class="file-stats">
<a href="#bf66897dbc44295e35876f589c838511ac83323b">
src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java
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<a href="#95c526084aa9ad658d7b25254d5fbfbe5332ccd9">
src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java
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<li class="file-stats">
<a href="#d944370ae2e28822d45ecbf14db2258019f68621">
src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java
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<li class="file-stats">
<a href="#f2ddb40fbd831e2acaed3990bb9ba8492f7139d7">
src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java
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<li class="file-stats">
<a href="#fe1030726e5488d620ac0704e82f64e568a5bbaf">
src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java
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<li class="file-stats">
<a href="#3dfd83b9458dbd8e0506d390375ab0d1d27c99f1">
src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java
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<li class="file-stats">
<a href="#0c6697ef52f14a2739123f0abddc573b0efce8bb">
src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java
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<a href="#9e64c2ba6f7c42d523a96f90dc144a508aa53475">
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java
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<h5>The diff was not included because it is too large.</h5>
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