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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-bcbio-gff">Debian Med / python-bcbio-gff</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/b7d4945775d88cc12edb403cc0c87b62c56d2e50">b7d49457</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T16:29:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/912c8c8568a6702c5ce29334819a47e8827990f0">912c8c85</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T16:29:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.6.9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/e5e1667ea61443e5a7065a885bed902ee0c4f8db">e5e1667e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T16:29:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.6.9'
Update to upstream version '0.6.9'
with Debian dir 565ae288046306e7dd08c6ef41110dc589787a44</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/585a08ab74da527ed6a6f3af2ac4799b0e471421">585a08ab</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T16:29:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing build dependency on dh addon.
Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/14fdd7f1a39b9436767abcb22583bc80412cf3f5">14fdd7f1</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T16:34:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
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<h4>6 changed files:</h4>
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<li class="file-stats">
<a href="#ba3404825a4d349f45211497986428bd4b75a757">
BCBio/GFF/GFFParser.py
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<li class="file-stats">
<a href="#377317303b32a87f51356a964b30d05b7cf78ba3">
BCBio/GFF/__init__.py
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<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#788d776bfe907f02f738f7115e219184170cb4f7">
bcbio_gff.egg-info/PKG-INFO
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="ba3404825a4d349f45211497986428bd4b75a757">
<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#ba3404825a4d349f45211497986428bd4b75a757"><strong>BCBio/GFF/GFFParser.py</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -406,7 +406,7 @@ class _AbstractMapReduceGFF:</td>
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406
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">find_id</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">base</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">find_id</span></span>
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408
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408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># NCBI style IDs in find_id</span></span>
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409
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<td class="new_line diff-line-num old" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">find_id</span><span class="p">.</span><span class="n" style="color: #333;">find</span><span class="p">(</span><span class="s" style="color: #d14;">"|"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;"><span class="idiff left">find_id</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">and</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">find_id</span><span class="p">.</span><span class="n" style="color: #333;">find</span><span class="p">(</span><span class="s" style="color: #d14;">"|"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>
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410
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410
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<pre style="margin: 0;"> <span id="LC410" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">test_id</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">strip</span><span class="p">()</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">find_id</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"|"</span><span class="p">)[</span><span class="mi" style="color: #099;">1</span><span class="p">:]]:</span></span>
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">test_id</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">test_id</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">base</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">test_id</span></span>
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<li id="377317303b32a87f51356a964b30d05b7cf78ba3">
<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#377317303b32a87f51356a964b30d05b7cf78ba3"><strong>BCBio/GFF/__init__.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,4 +3,4 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">BCBio.GFF.GFFParser</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">GFFParser</span><span class="p">,</span> <span class="n" style="color: #333;">DiscoGFFParser</span><span class="p">,</span> <span class="n" style="color: #333;">GFFExaminer</span><span class="p">,</span> <span class="n" style="color: #333;">parse</span><span class="p">,</span> <span class="n" style="color: #333;">parse_simple</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">BCBio.GFF.GFFOutput</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">GFF3Writer</span><span class="p">,</span> <span class="n" style="color: #333;">write</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.6.<span class="idiff left right">8</span>"</span></span></pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.6.<span class="idiff left right">9</span>"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 1.0</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: bcbio-gff</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 0.6.<span class="idiff left right">8</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 0.6.<span class="idiff left right">9</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Read and write Generic Feature Format (GFF) with Biopython integration.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/chapmanb/bcbb/tree/master/gff</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Brad Chapman</span>
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<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#788d776bfe907f02f738f7115e219184170cb4f7"><strong>bcbio_gff.egg-info/PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 1.0</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: bcbio-gff</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 0.6.<span class="idiff left right">8</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 0.6.<span class="idiff left right">9</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Read and write Generic Feature Format (GFF) with Biopython integration.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/chapmanb/bcbb/tree/master/gff</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Brad Chapman</span>
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<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-bcbio-gff (0.6.9-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Étienne Mollier <emollier@debian.org> Sun, 16 Jan 2022 16:29:42 +0100</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">python-bcbio-gff (0.6.8-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Team Upload.</span>
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<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/compare/a0c8f7c5b3bfaa3b3a269bb546b80e7ac84166a8...14fdd7f1a39b9436767abcb22583bc80412cf3f5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,8 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-all,</span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-setuptools,</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-biopython,</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> python3-six</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> python3-six,</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> debhelper</span>
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14
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Standards-Version: 4.6.0</span>
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15
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-bcbio-gff</span>
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16
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/python-bcbio-gff.git</span>
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