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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/intake">Debian Med / intake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2">1a421721</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-16T21:04:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.6.5</pre>
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<h4>29 changed files:</h4>
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<li class="file-stats">
<a href="#d406399e872d891eb100d646c59df0cae2df0045">
.github/workflows/main.yaml
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<li class="file-stats">
<a href="#00b2baf853692520d29cea70a1360d390980648d">
docs/source/api_user.rst
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<li class="file-stats">
<a href="#5f3d3b4043fd94ae6e71b8755790d863c01a514d">
docs/source/catalog.rst
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<li class="file-stats">
<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
docs/source/conf.py
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<li class="file-stats">
<a href="#b3a8792e3520b11da7636bcb02b6ba5c409e6121">
docs/source/plugin-directory.rst
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</li>
<li class="file-stats">
<a href="#b48c9d6665ae3e87df865b7a71ebfeb1332176ed">
intake/_version.py
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<li class="file-stats">
<a href="#6beec5ae4a1e0ac1973c8e29e19cfe8cf6001739">
intake/catalog/base.py
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<li class="file-stats">
<a href="#babde0ec6857686e75d661128bcd03bca68a9255">
intake/catalog/local.py
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<li class="file-stats">
<a href="#10d782fc0ea1867857d5a9e6ed726a7adcfea7fe">
intake/catalog/remote.py
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<li class="file-stats">
<a href="#574dcdf7ed9073d8e8d3db0c0cc4c9a09317cc8e">
intake/catalog/tests/test_local.py
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<li class="file-stats">
<a href="#9bbcfca3f5b799f8d1f34f1469a06de6696cd072">
intake/catalog/tests/test_parameters.py
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<li class="file-stats">
<a href="#e5ddd175dfbd679fb6c543cbafec0457247d931d">
intake/catalog/tests/test_reload_integration.py
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<li class="file-stats">
<a href="#edc153211b31365ad54c2066380f432fb7e5a779">
intake/catalog/tests/test_utils.py
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<li class="file-stats">
<a href="#d406105909a42981ea616d6afe48fd327a833b5e">
intake/catalog/utils.py
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<li class="file-stats">
<a href="#9d63018462e0d56aaa3fdf1e300112bc29af32ab">
intake/cli/client/subcommands/drivers.py
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<li class="file-stats">
<a href="#001c005db53f5ed3b331d305e31e57c6eeef0a6f">
intake/conftest.py
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<li class="file-stats">
<a href="#823c8c89ee5c4e1ea98ceee8b34eef1f7946f392">
intake/source/discovery.py
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<li class="file-stats">
<a href="#c698b311ba3349ee5d3be02673b49cbcd489924c">
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+
intake/source/jsonfiles.py
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<li class="file-stats">
<a href="#93d2144d2c61c203f2e5b4228010920339e93c5e">
intake/source/tests/test_discovery.py
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<li class="file-stats">
<a href="#f362c4e5ead313f545a5e98899c781dd5524beb4">
<span class="new-file">
+
intake/source/tests/test_json.py
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<li class="file-stats">
<a href="#24375736fa4da820948ba0f6c94dca8711933d50">
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+
intake/source/tests/test_tiled.py
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<a href="#a4086bb2c2c81e4edbcd5e46b743cf8db8ea748f">
<span class="new-file">
+
intake/source/tiled.py
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<li class="file-stats">
<a href="#2d8ebd7e8eca4404eb062bd5e5f037fd94573e27">
intake/tests/catalog_inherit_params.yml
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<li class="file-stats">
<a href="#8baad4fd51da699dfd83100ce6cdd1223d5cf0fd">
intake/tests/catalog_nested_sub.yml
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<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
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<li class="file-stats">
<a href="#6aed5a26e824adc60b507eec295a869424090e81">
scripts/ci/environment-py37.yml
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<li class="file-stats">
<a href="#e7fbf744b401b127202898142bbf959efe8c81cd">
scripts/ci/environment-py39.yml
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#ef0ce1af706096d33ecc12f2757a5e1cb91ec6ca">
versioneer.py
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</ul>
<h4>Changes:</h4>
<li id="d406399e872d891eb100d646c59df0cae2df0045">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#d406399e872d891eb100d646c59df0cae2df0045"><strong>.github/workflows/main.yaml</strong></a>
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<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ jobs:</td>
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<td class="old_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">strategy</span><span class="pi">:</span></span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="yaml"> <span class="na" style="color: #008080;">fail-fast</span><span class="pi">:</span> <span class="no" style="color: #008080;">false</span></span>
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<td class="old_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="yaml"> <span class="na" style="color: #008080;">matrix</span><span class="pi">:</span></span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC16" class="line" lang="yaml"> <span class="na" style="color: #008080;">CONDA_ENV</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">py37</span><span class="pi">,</span> <span class="nv" style="color: #008080;">py38</span><span class="pi">,</span> <span class="nv" style="color: #008080;">pip</span><span class="pi">]</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="old_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC16" class="line" lang="yaml"> <span class="na" style="color: #008080;">CONDA_ENV</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">py37</span><span class="pi">,</span> <span class="nv" style="color: #008080;">py38</span><span class="pi">,</span> <span class="nv" style="color: #008080;"><span class="idiff left">py39</span></span><span class="pi"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="nv" style="color: #008080;">pip</span><span class="pi">]</span></span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC17" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Checkout</span></span>
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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/checkout@v2</span></span>
</pre>
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</li>
<li id="00b2baf853692520d29cea70a1360d390980648d">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#00b2baf853692520d29cea70a1360d390980648d"><strong>docs/source/api_user.rst</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,6 +12,8 @@ These are reference class and function definitions likely to be useful to everyo</td>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> intake.open_</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> intake.source.csv.CSVSource</span>
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<td class="old_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> intake.source.textfiles.TextFilesSource</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> intake.source.jsonfiles.JSONFileSource</span>
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> intake.source.jsonfiles.JSONLinesFileSource</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> intake.source.npy.NPySource</span>
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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> intake.source.zarr.ZarrArraySource</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> intake.catalog.local.YAMLFileCatalog</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,6 +53,12 @@ Source classes</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext">.. autoclass:: intake.source.textfiles.TextFilesSource</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> :members: __init__, discover, read_partition, read, to_dask, persist, export</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">.. autoclass:: intake.source.jsonfiles.JSONFileSource</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> :members: __init__, discover, read, persist, export</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">.. autoclass:: intake.source.jsonfiles.JSONLinesFileSource</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> :members: __init__, discover, read, head, persist, export</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">.. autoclass:: intake.source.npy.NPySource</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> :members: __init__, discover, read_partition, read, to_dask, persist, export</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"></span>
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<li id="5f3d3b4043fd94ae6e71b8755790d863c01a514d">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#5f3d3b4043fd94ae6e71b8755790d863c01a514d"><strong>docs/source/catalog.rst</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -293,6 +293,9 @@ resolve to ``"http://server:port/user/"``</td>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext">Parameter Definition</span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext">--------------------</span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext">Source parameters</span>
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext">'''''''''''''''''</span>
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext">A source definition can contain a "parameters" block.</span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext">Expressed in YAML, a parameter may look as follows:</span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -301,7 +304,7 @@ Expressed in YAML, a parameter may look as follows:</td>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> parameters:</span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> name:</span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="plaintext"> description: name to use # human-readable text for what this parameter means</span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext"> type: str # one of bool, str, int, float, list[str<span class="idiff left right">], list[int], list[</span>float], datetime</span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> type: str # one of bool, str, int, float, list[str<span class="idiff left"> | int | </span>float], datetime<span class="idiff right">, mlist</span></span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="plaintext"> default: normal # optional, value to assume if user does not override</span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> allowed: ["normal", "strange"] # optional, list of values that are OK, for validation</span>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="plaintext"> min: "n" # optional, minimum allowed, for validation</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -322,9 +325,62 @@ can have one of two uses:</td>
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<pre style="margin: 0;"> <span id="LC325" class="line" lang="plaintext"> for example, an integer. It makes no sense to provide a default for this case (the argument already has a value),</span>
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<pre style="margin: 0;"> <span id="LC326" class="line" lang="plaintext"> but providing a default will not raise an exception.</span>
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<pre style="margin: 0;"> <span id="LC327" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext">- the "mlist" type is special: it means that the input must be a list, whose values are chosen from the</span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> allowed list. This is the only type where the parameter value is not the same type as the allowed list's</span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext"> values, e.g., if a list of str is set for ``allowed``, a list of str must also be the final value.</span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC332" class="line" lang="plaintext">Note: the ``datetime`` type accepts multiple values:</span>
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<pre style="margin: 0;"> <span id="LC333" class="line" lang="plaintext">Python datetime, ISO8601 string, Unix timestamp int, "now" and "today".</span>
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<pre style="margin: 0;"> <span id="LC334" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext">Catalog parameters</span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext">''''''''''''''''''</span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext">You can also define user parameters at the catalog level. This applies the parameter to</span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext">all entries within that catalog, without having to define it for each and every entry.</span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext">Furthermore, catalogs dested within the catalog will also inherit the parameter(s).</span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext">For example, with the following spec</span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext">.. code-block:: yaml</span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"></span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"> metadata:</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext"> version: 1</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"> parameters:</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"> bucket:</span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"> type: str</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext"> description: description</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext"> default: test_bucket</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"> sources:</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> param_source:</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"> driver: parquet</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"> description: description</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"> args:</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"> urlpath: s3://{{bucket}}/file.parquet</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"> subcat:</span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"> driver: yaml_file</span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> path: "{{CATALOG_DIR}}/other.yaml"</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"></span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext">If ``cat`` is the corresponsing catalog instance,</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext">the URL of source ``cat.param_source`` will evaluate to "s3://test_bucket/file.parquet" by default, but</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext">the parameter can be overridden with ``cat.param_source(bucket="other_bucket")``. Also, any</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext">entries of ``subcat``, another catalog referenced from here, would also have the "bucket"-named</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext">parameter attached to all sources. Of course, those sources do no need to make use of the</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext">parameter.</span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext">To change the default, we can gerenate a new instance</span>
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext">.. code-block:: python</span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> cat2 = cat(bucket="production") # sets default value of "bucket" for cat2</span>
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"> subcat = cat.subcat(bucket="production") # sets default only for the nested catalog</span>
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext">Of course, in these situations you can still override the value of the parameter for any</span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext">source, or pass explicit values for the arguments of the source, as normal.</span>
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext">For cases where the catalog is not defined in a YAML spec, the argument ``user_parameters``</span>
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext">to the constructor takes the same form as ``parameters`` above: a dict of user parameters,</span>
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext">either as ``UserParameter`` instances or as a dictionary spec for each one.</span>
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="plaintext">Driver Selection</span>
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="plaintext">----------------</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,6 +182,3 @@ intersphinx_mapping = {'https://docs.python.org/': None}</td>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"><span class="n" style="color: #333;">numpydoc_show_class_members</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="python"><span class="n" style="color: #333;">numpydoc_show_inherited_class_members</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="python"><span class="n" style="color: #333;">numpydoc_class_members_toctree</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span></pre>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setup</span><span class="p">(</span><span class="n" style="color: #333;">app</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="python"> <span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">add_stylesheet</span><span class="p">(</span><span class="s" style="color: #d14;">'css/custom.css'</span><span class="p">)</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#b3a8792e3520b11da7636bcb02b6ba5c409e6121"><strong>docs/source/plugin-directory.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,8 @@ This is a list of known projects which install driver plugins for Intake, and th</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">contains in parentheses:</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">* builtin to Intake (``catalog``, ``csv``, ``intake_remote``, ``ndzarr``,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> ``numpy``, ``textfiles``, ``yaml_file_cat``, ``yaml_files_cat``, ``zarr_cat``)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> ``numpy``, ``textfiles``, ``yaml_file_cat``, ``yaml_files_cat``, ``zarr_cat``,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> ``json``, ``jsonl``)</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">* `intake-astro <https://github.com/intake/intake-astro>`_ Table and array loading of FITS astronomical data (``fits_array``, ``fits_table``)</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">* `intake-accumulo <https://github.com/intake/intake-accumulo>`_ Apache Accumulo clustered data storage (``accumulo``)</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">* `intake-avro <https://github.com/intake/intake-avro>`_: Apache Avro data serialization format (``avro_table``, ``avro_sequence``)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +18,7 @@ contains in parentheses:</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">* `intake-elasticsearch <https://github.com/intake/intake-elasticsearch>`_: Elasticsearch search and analytics engine (``elasticsearch_seq``, ``elasticsearch_table``)</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">* `intake-esm <https://github.com/NCAR/intake-esm>`_: Plugin for building and loading intake catalogs for earth system data sets holdings, such as `CMIP <https://cmip.llnl.gov/>`_ (Coupled Model Intercomparison Project) and CESM Large Ensemble datasets.</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">* `intake-geopandas <https://github.com/informatics-lab/intake_geopandas>`_: load from ESRI Shape Files, GeoJSON, and geospatial databases with geopandas (``geojson``, ``postgis``, ``shapefile``, ``spatialite``) and ``regionmask`` for opening shapefiles into `regionmask <https://github.com/mathause/regionmask/>`_.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">* `intake-google-analytics <https://github.com/intake/intake-google-analytics>`_: run Google Analytics queries and load data as a DataFrame (``google_analytics_query``)</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">* `intake-hbase <https://github.com/intake/intake-hbase>`_: Apache HBase database (``hbase``)</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">* `intake-iris <https://github.com/informatics-lab/intake-iris>`_ load netCDF and GRIB files with IRIS (``grib``, ``netcdf``)</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">* `intake-metabase <https://github.com/continuumio/intake-metabase>`_: Generate catalogs and load tables as DataFrames from Metabase (``metabase_catalog``, ``metabase_table``)</span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#b48c9d6665ae3e87df865b7a71ebfeb1332176ed"><strong>intake/_version.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,9 +24,9 @@ def get_keywords():</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># setup.py/versioneer.py will grep for the variable names, so they must</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># each be defined on a line of their own. _version.py will just call</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># get_keywords().</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">git_refnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" (HEAD -> master, tag: 0.6.<span class="idiff left right">4</span>)"</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">git_full</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<span class="idiff left right">d9faa048bbc09d74bb6972f672155e3814c3ca6</span>2"</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">git_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"202<span class="idiff left">1-10</span>-0<span class="idiff">8</span> 1<span class="idiff">0</span>:3<span class="idiff">4:28</span> -0<span class="idiff right">4</span>00"</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">git_refnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" (HEAD -> master, tag: 0.6.<span class="idiff left right">5</span>)"</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">git_full</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<span class="idiff left right">bc1d43524f9f0c38ccc5285d1f3fa02c3733937</span>2"</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">git_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"202<span class="idiff left">2-01</span>-0<span class="idiff">9</span> 1<span class="idiff">7</span>:3<span class="idiff">2:52</span> -0<span class="idiff right">5</span>00"</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">keywords</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"refnames"</span><span class="p">:</span> <span class="n" style="color: #333;">git_refnames</span><span class="p">,</span> <span class="s" style="color: #d14;">"full"</span><span class="p">:</span> <span class="n" style="color: #333;">git_full</span><span class="p">,</span> <span class="s" style="color: #d14;">"date"</span><span class="p">:</span> <span class="n" style="color: #333;">git_date</span><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">keywords</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +42,7 @@ class Catalog(DataSource):</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">entries</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="n" style="color: #333;">ttl</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'default'</span><span class="p">,</span> <span class="n" style="color: #333;">storage_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'default'</span><span class="p">,</span> <span class="n" style="color: #333;">storage_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">user_parameters</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +83,15 @@ class Catalog(DataSource):</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getenv</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getenv</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getshell</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getshell</span></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">storage_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">storage_options</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">user_parameters</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">user_parameters</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.local</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">UserParameter</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="n" style="color: #333;">name</span><span class="p">:</span> <span class="p">(</span><span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">up</span><span class="p">)</span> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">up</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">up</span><span class="p">)</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">up</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()}</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">user_parameters</span><span class="p">,</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">list</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">)):</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="n" style="color: #333;">up</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]:</span> <span class="n" style="color: #333;">up</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">up</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">user_parameters</span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">persist_mode</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="s" style="color: #d14;">'always'</span><span class="p">,</span> <span class="s" style="color: #d14;">'never'</span><span class="p">,</span> <span class="s" style="color: #d14;">'default'</span><span class="p">]:</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># should be True, False, None ?</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'Persist mode (%s) not understood'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">persist_mode</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,7 +190,9 @@ class Catalog(DataSource):</td>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="python"> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getenv</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="python"> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getshell</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span> <span class="ow" style="font-weight: 600;">or</span> <span class="p">{}).</span><span class="n" style="color: #333;">copy</span><span class="p">(),</span></span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="python"> <span class="n" style="color: #333;">storage_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">storage_options</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="python"> <span class="n" style="color: #333;">storage_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">storage_options</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"> <span class="n" style="color: #333;">user_parameters</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">copy</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="python"> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span><span class="p">[</span><span class="s" style="color: #d14;">'search'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">'text'</span><span class="p">:</span> <span class="n" style="color: #333;">text</span><span class="p">,</span> <span class="s" style="color: #d14;">'upstream'</span><span class="p">:</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="python"> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">cat</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span></span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">e</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">entries</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">():</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -304,8 +315,38 @@ class Catalog(DataSource):</td>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="python"> <span class="n" style="color: #333;">entry</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">[</span><span class="n" style="color: #333;">name</span><span class="p">]</span></span>
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305
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_catalog</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span></span>
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317
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_pmode</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">pmode</span></span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="python"></span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="python"> <span class="n" style="color: #333;">up_names</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">((</span><span class="n" style="color: #333;">up</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">up</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">up</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_user_parameters</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="python"> <span class="n" style="color: #333;">ups</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">up</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">up</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">name</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">up_names</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_user_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ups</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_user_parameters</span> <span class="ow" style="font-weight: 600;">or</span> <span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">entry</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">configure_new</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kwargs</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">.local</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">UserParameter</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="python"> <span class="n" style="color: #333;">ups</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">kwargs</span><span class="p">.</span><span class="n" style="color: #333;">copy</span><span class="p">().</span><span class="n" style="color: #333;">items</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">up</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">up</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">up</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="python"> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">copy</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="python"> <span class="n" style="color: #333;">kw</span><span class="p">[</span><span class="s" style="color: #d14;">'default'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v</span></span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="python"> <span class="n" style="color: #333;">ups</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="python"> <span class="n" style="color: #333;">kwargs</span><span class="p">.</span><span class="n" style="color: #333;">pop</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="python"> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">_captured_init_kwargs</span><span class="p">.</span><span class="n" style="color: #333;">copy</span><span class="p">()</span></span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="python"> <span class="n" style="color: #333;">kw</span><span class="p">[</span><span class="s" style="color: #d14;">'default'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v</span></span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="python"> <span class="n" style="color: #333;">kw</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">k</span></span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="python"> <span class="n" style="color: #333;">ups</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="python"> <span class="n" style="color: #333;">kwargs</span><span class="p">.</span><span class="n" style="color: #333;">pop</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="python"> <span class="n" style="color: #333;">new</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">super</span><span class="p">().</span><span class="n" style="color: #333;">configure_new</span><span class="p">(</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kwargs</span><span class="p">)</span></span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="python"> <span class="n" style="color: #333;">new</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">(</span><span class="n" style="color: #333;">ups</span><span class="p">)</span></span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">new</span></span>
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="python"></span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="python"> <span class="n" style="color: #333;">__call__</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">configure_new</span></span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="python"></span>
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309
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350
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">reload_on_change</span></span>
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351
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_get_entries</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC352" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -390,14 +431,14 @@ class Catalog(DataSource):</td>
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<pre style="margin: 0;"> <span id="LC431" class="line" lang="python"><span class="s" style="color: #d14;"> nested directories with cat.name1.name2, cat['name1.name2'] *or*</span></span>
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="python"><span class="s" style="color: #d14;"> cat['name1', 'name2']</span></span>
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p"><span class="idiff left">.</span></span><span class="n" style="color: #333;"><span class="idiff">_get_entries</span></span><span class="p"><span class="idiff right">()</span>:</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># triggers reload_on_change</span></span>
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">e</span></span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_<span class="idiff">entries</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;">key</span><span class="p"><span class="idiff right">]</span></span></span>
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">e</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">_catalog</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="bp" style="color: #999;"><span class="idiff right">self</span></span></span>
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">e</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">_pmode</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="bp" style="color: #999;"><span class="idiff">self</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">pmode</span></span></span>
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">e</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'catalog'</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left">e</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">name</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="n" style="color: #333;"><span class="idiff">key</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left">e</span></span><span class="p"><span class="idiff right">()</span></span></span>
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">s</span></span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_<span class="idiff">get_entry</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;">key</span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">s</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'catalog'</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">s</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">name</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">key</span></span></span>
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="python"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">s</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">user_parameters</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">update</span></span><span class="p"><span class="idiff">(</span></span><span class="bp" style="color: #999;"><span class="idiff">self</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">user_parameters</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">copy</span></span><span class="p"><span class="idiff right">())</span></span></span>
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left right">s</span></span></span>
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left right">s</span></span></span>
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="s" style="color: #d14;">'.'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">key</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="python"> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">key</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">'.'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +42,7 @@ class UserParameter(DictSerialiseMixin):</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"><span class="s" style="color: #d14;"> description: str</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;"> narrative text</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"><span class="s" style="color: #d14;"> type: str</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> one of list``(COERSION_RULES)``</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> one of list<span class="idiff left right"> </span>``(COERSION_RULES)``</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"> default: type value</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> same type as ``type``. It a str, may include special functions</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;"> env, shell, client_env, client_shell.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -55,7 +55,7 @@ class UserParameter(DictSerialiseMixin):</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"> <span class="nb" style="color: #0086b3;">min</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">max</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">allowed</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">description</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="nb" style="color: #0086b3;">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">type</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="nb" style="color: #0086b3;">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">type</span><span class="idiff left"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">or</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">__builtins__</span></span><span class="p"><span class="idiff">[</span></span><span class="s" style="color: #d14;"><span class="idiff">"type"</span></span><span class="p"><span class="idiff">](</span></span><span class="n" style="color: #333;"><span class="idiff">default</span></span><span class="p"><span class="idiff">).</span></span><span class="n" style="color: #333;"><span class="idiff right">__name__</span></span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="nb" style="color: #0086b3;">min</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">min</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="nb" style="color: #0086b3;">max</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">max</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">allowed</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">allowed</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -691,28 +691,14 @@ class YAMLFileCatalog(Catalog):</td>
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<pre style="margin: 0;"> <span id="LC691" class="line" lang="python"> <span class="n" style="color: #333;">cfg</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">result</span><span class="p">.</span><span class="n" style="color: #333;">data</span></span>
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<pre style="margin: 0;"> <span id="LC692" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC693" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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<pre style="margin: 0;">-<span id="LC694" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC695" class="line" lang="python"> <span class="n" style="color: #333;">shared_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="s" style="color: #d14;">"metadata"</span><span class="p">][</span><span class="s" style="color: #d14;">"parameters"</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC696" class="line" lang="python"> <span class="n" style="color: #333;">params</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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<pre style="margin: 0;">-<span id="LC697" class="line" lang="python"> <span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">attrs</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC698" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">attrs</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">shared_parameters</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC699" class="line" lang="python"> <span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC700" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">KeyError</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC701" class="line" lang="python"> <span class="n" style="color: #333;">params</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="python"> <span class="n" style="color: #333;">shared_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">"metadata"</span><span class="p">,</span> <span class="p">{}).</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">"parameters"</span><span class="p">,</span> <span class="p">{})</span></span>
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">({</span></span>
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="p">:</span> <span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">attrs</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">attrs</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">shared_parameters</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="python"> <span class="p">})</span></span>
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<pre style="margin: 0;"> <span id="LC699" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC700" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">entry</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">cfg</span><span class="p">[</span><span class="s" style="color: #d14;">'data_sources'</span><span class="p">]:</span></span>
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<pre style="margin: 0;"> <span id="LC701" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_catalog</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span></span>
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<pre style="margin: 0;">-<span id="LC705" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">params</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC706" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC707" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Note that putting the entry parameters after the global parameters</span></span>
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<pre style="margin: 0;">-<span id="LC708" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># means that local parameters will overwrite any inherited parameters</span></span>
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<pre style="margin: 0;">-<span id="LC709" class="line" lang="python"> <span class="n" style="color: #333;">all_params</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">params</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_user_parameters</span></span>
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<pre style="margin: 0;">-<span id="LC710" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">AttributeError</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="python"> <span class="n" style="color: #333;">all_params</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">params</span></span>
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<pre style="margin: 0;">-<span id="LC712" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC713" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">__setattr__</span><span class="p">(</span><span class="s" style="color: #d14;">"_user_parameters"</span><span class="p">,</span> <span class="n" style="color: #333;">all_params</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC714" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Necessary for a copy of the entry to have the same parameters</span></span>
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<pre style="margin: 0;">-<span id="LC715" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_captured_init_kwargs</span><span class="p">[</span><span class="s" style="color: #d14;">"parameters"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">all_params</span></span>
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<pre style="margin: 0;"> <span id="LC702" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">[</span><span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">entry</span></span>
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<pre style="margin: 0;"> <span id="LC703" class="line" lang="python"> <span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_filesystem</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">filesystem</span></span>
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<pre style="margin: 0;"> <span id="LC704" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -793,11 +779,14 @@ class YAMLFilesCatalog(Catalog):</td>
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<pre style="margin: 0;"> <span id="LC779" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">path</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_cats</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC780" class="line" lang="python"> <span class="n" style="color: #333;">entry</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">LocalCatalogEntry</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="s" style="color: #d14;">"YAML file: %s"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">name</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC781" class="line" lang="python"> <span class="s" style="color: #d14;">'yaml_file_cat'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC796" class="line" lang="python"> <span class="n" style="color: #333;">kwargs</span><span class="p">,</span> <span class="p">[],</span> <span class="p"><span class="idiff left right">{}</span>,</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span><span class="p">,</span> <span class="n" style="color: #333;">d</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC782" class="line" lang="python"> <span class="n" style="color: #333;">kwargs</span><span class="p">,</span> <span class="p">[],</span> <span class="p"><span class="idiff left right">[]</span>,</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span><span class="p">,</span> <span class="n" style="color: #333;">d</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC783" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_flatten</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC784" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># store a concrete Catalog</span></span>
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<pre style="margin: 0;"> <span id="LC785" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC800" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_cats</span><span class="p">[</span><span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">entry</span><span class="p">()</span></span>
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786
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<pre style="margin: 0;">+<span id="LC786" class="line" lang="python"> <span class="n" style="color: #333;">cat</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">entry</span><span class="p">()</span></span>
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787
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<pre style="margin: 0;">+<span id="LC787" class="line" lang="python"> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="nb" style="color: #0086b3;">reload</span><span class="p">()</span></span>
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788
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<pre style="margin: 0;">+<span id="LC788" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">(</span><span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">)</span></span>
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789
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<pre style="margin: 0;">+<span id="LC789" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_cats</span><span class="p">[</span><span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat</span></span>
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801
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790
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<pre style="margin: 0;"> <span id="LC790" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">IOError</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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802
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791
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<pre style="margin: 0;"> <span id="LC791" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;">info</span><span class="p">(</span><span class="s" style="color: #d14;">'Loading "%s" as a catalog failed: %s'</span></span>
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803
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792
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<pre style="margin: 0;"> <span id="LC792" class="line" lang="python"> <span class="s" style="color: #d14;">''</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">entry</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="817" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="806" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -817,10 +806,6 @@ class YAMLFilesCatalog(Catalog):</td>
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817
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806
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<pre style="margin: 0;"> <span id="LC806" class="line" lang="python"> <span class="n" style="color: #333;">entries</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">(</span><span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">)</span></span>
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818
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807
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<pre style="margin: 0;"> <span id="LC807" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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819
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808
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<pre style="margin: 0;"> <span id="LC808" class="line" lang="python"> <span class="n" style="color: #333;">entries</span><span class="p">[</span><span class="n" style="color: #333;">entry</span><span class="p">.</span><span class="n" style="color: #333;">_name</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">entry</span></span>
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<pre style="margin: 0;">-<span id="LC820" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># This is thread safe as long as the hash values for entries are</span></span>
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<pre style="margin: 0;">-<span id="LC821" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># computed in C --- i.e. if they are built-in types like strings. If</span></span>
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<pre style="margin: 0;">-<span id="LC822" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># they implement __hash__ in Python then this is not threadsafe, and it</span></span>
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823
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<pre style="margin: 0;">-<span id="LC823" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># would need a lock.</span></span>
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809
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<pre style="margin: 0;"> <span id="LC809" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">(</span><span class="n" style="color: #333;">entries</span><span class="p">)</span></span>
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810
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<pre style="margin: 0;"> <span id="LC810" class="line" lang="python"></span>
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811
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<pre style="margin: 0;"> <span id="LC811" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#10d782fc0ea1867857d5a9e6ed726a7adcfea7fe"><strong>intake/catalog/remote.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -156,6 +156,7 @@ class RemoteCatalog(Catalog):</td>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="python"> <span class="n" style="color: #333;">auth</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">auth</span><span class="p">,</span></span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="python"> <span class="n" style="color: #333;">http_args</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">http_args</span><span class="p">,</span></span>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="python"> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_page_size</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">pmode</span><span class="p">,</span></span>
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159
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># user_parameters=user_parameters,</span></span>
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160
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="python"> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">source</span><span class="p">)</span></span>
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161
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">page</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,6 +182,7 @@ class RemoteCatalog(Catalog):</td>
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181
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"> <span class="n" style="color: #333;">auth</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">auth</span><span class="p">,</span></span>
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182
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="python"> <span class="n" style="color: #333;">http_args</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">http_args</span><span class="p">,</span></span>
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183
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="python"> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_page_size</span><span class="p">,</span></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">pmode</span><span class="p">,</span></span>
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184
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="python"> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="s" style="color: #d14;">'source'</span><span class="p">])</span></span>
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185
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="python"></span>
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186
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_get_http_args</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">params</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,6 +276,7 @@ class RemoteCatalog(Catalog):</td>
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274
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="python"> <span class="n" style="color: #333;">url</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">url</span><span class="p">,</span></span>
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275
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="python"> <span class="n" style="color: #333;">http_args</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">http_args</span><span class="p">,</span></span>
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276
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="python"> <span class="n" style="color: #333;">source_id</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">source_id</span><span class="p">,</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">pmode</span><span class="p">,</span></span>
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277
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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278
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="python"> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">cat</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span></span>
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279
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">cat</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -389,8 +392,8 @@ class RemoteCatalogEntry(CatalogEntry):</td>
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389
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392
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="python"> <span class="s" style="color: #d14;">"""An entry referring to a remote data definition"""</span></span>
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390
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">url</span><span class="p">,</span> <span class="n" style="color: #333;">auth</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">user_parameters</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="python"> <span class="n" style="color: #333;">container</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="python"> <span class="n" style="color: #333;">http_args</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">direct_access</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="python"> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kwags</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="python"> <span class="n" style="color: #333;">http_args</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">persist_mode</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s" style="color: #d14;"><span class="idiff">"default"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">direct_access</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="python"> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kwa<span class="idiff left right">r</span>gs</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC399" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -412,6 +415,8 @@ class RemoteCatalogEntry(CatalogEntry):</td>
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415
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<pre style="margin: 0;"> <span id="LC415" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">description</span></span>
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<pre style="margin: 0;"> <span id="LC416" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">metadata</span> <span class="ow" style="font-weight: 600;">or</span> <span class="p">{}</span></span>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_page_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page_size</span></span>
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Persist mode describing a nested RemoteCatalog</span></span>
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">catalog_pmode</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">persist_mode</span></span>
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420
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<pre style="margin: 0;"> <span id="LC420" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_user_parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">remake_instance</span><span class="p">(</span><span class="n" style="color: #333;">up</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC421" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">up</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="s" style="color: #d14;">'cls'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">up</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">up</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -423,6 +428,8 @@ class RemoteCatalogEntry(CatalogEntry):</td>
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423
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428
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<pre style="margin: 0;"> <span id="LC428" class="line" lang="python"> </span>
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429
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<pre style="margin: 0;"> <span id="LC429" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">RemoteCatalogEntry</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">__init__</span><span class="p">(</span><span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">getenv</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC430" class="line" lang="python"> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">getshell</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Persist mode for the RemoteCatalogEntry</span></span>
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_pmode</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"never"</span></span>
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">describe</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -456,11 +463,12 @@ class RemoteCatalogEntry(CatalogEntry):</td>
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="python"> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_page_size</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC464" class="line" lang="python"> <span class="n" style="color: #333;">auth</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">auth</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC465" class="line" lang="python"> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getenv</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="python"> <span class="n" style="color: #333;">persist_mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">catalog_pmode</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC467" class="line" lang="python"> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">getshell</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">open_remote</span><span class="p">(</span><span class="n" style="color: #333;">url</span><span class="p">,</span> <span class="n" style="color: #333;">entry</span><span class="p">,</span> <span class="n" style="color: #333;">container</span><span class="p">,</span> <span class="n" style="color: #333;">user_parameters</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="n" style="color: #333;">http_args</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="python"> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">auth</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="python"> <span class="n" style="color: #333;">page_size</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">persist_mode</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff">None</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">auth</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">getenv</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">getshell</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="python"> <span class="s" style="color: #d14;">"""Create either local direct data source or remote streamed source"""</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.container</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">container_map</span></span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">msgpack</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -499,13 +507,14 @@ def open_remote(url, entry, container, user_parameters, description, http_args,</td>
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="python"> <span class="n" style="color: #333;">response</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">({</span><span class="s" style="color: #d14;">'auth'</span><span class="p">:</span> <span class="n" style="color: #333;">auth</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="python"> <span class="s" style="color: #d14;">'getenv'</span><span class="p">:</span> <span class="n" style="color: #333;">getenv</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="python"> <span class="s" style="color: #d14;">'getshell'</span><span class="p">:</span> <span class="n" style="color: #333;">getshell</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="python"> <span class="s" style="color: #d14;">'page_size'</span><span class="p">:</span> <span class="n" style="color: #333;">page_size</span></span>
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="python"> <span class="s" style="color: #d14;">'page_size'</span><span class="p">:</span> <span class="n" style="color: #333;">page_size</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="python"> <span class="s" style="color: #d14;">'persist_mode'</span><span class="p">:</span> <span class="n" style="color: #333;">persist_mode</span></span>
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO ttl?</span></span>
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO storage_options?</span></span>
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="python"> <span class="p">})</span></span>
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<pre style="margin: 0;"> <span id="LC515" class="line" lang="python"> <span class="n" style="color: #333;">source</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">container_map</span><span class="p">[</span><span class="n" style="color: #333;">container</span><span class="p">](</span><span class="n" style="color: #333;">url</span><span class="p">,</span> <span class="n" style="color: #333;">http_args</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">response</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC516" class="line" lang="python"> <span class="n" style="color: #333;">source</span><span class="p">.</span><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">description</span></span>
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<pre style="margin: 0;"> <span id="LC517" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">source</span></span>
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC518" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC519" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">'Server error: %d, %s'</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">req</span><span class="p">.</span><span class="n" style="color: #333;">status_code</span><span class="p">,</span> <span class="n" style="color: #333;">req</span><span class="p">.</span><span class="n" style="color: #333;">reason</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="python"></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#574dcdf7ed9073d8e8d3db0c0cc4c9a09317cc8e"><strong>intake/catalog/tests/test_local.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -803,23 +803,6 @@ def test_cat_dictlike(catalog1):</td>
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<pre style="margin: 0;"> <span id="LC803" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">catalog1</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">())</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">catalog1</span><span class="p">.</span><span class="n" style="color: #333;">keys</span><span class="p">(),</span> <span class="n" style="color: #333;">catalog1</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">()))</span></span>
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804
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<pre style="margin: 0;"> <span id="LC804" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC805" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC806" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span></span>
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<pre style="margin: 0;">-<span id="LC807" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">inherit_params_cat</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC808" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">tempfile</span><span class="p">.</span><span class="n" style="color: #333;">TemporaryDirectory</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tmp_dir</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC809" class="line" lang="python"> <span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posixpath</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">tmp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"intake"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC810" class="line" lang="python"> <span class="n" style="color: #333;">target_catalog</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_inherit_params.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC811" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">target_catalog</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC812" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC813" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC814" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span></span>
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<pre style="margin: 0;">-<span id="LC815" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">inherit_params_multiple_cats</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC816" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">tempfile</span><span class="p">.</span><span class="n" style="color: #333;">TemporaryDirectory</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tmp_dir</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC817" class="line" lang="python"> <span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posixpath</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">tmp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"intake"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC818" class="line" lang="python"> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_inherit_params.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC819" class="line" lang="python"> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_nested_sub.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC820" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"/*.yml"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC821" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC822" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC806" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_inherit_params</span><span class="p">(</span><span class="n" style="color: #333;">inherit_params_cat</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC807" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">inherit_params_cat</span><span class="p">.</span><span class="n" style="color: #333;">param</span><span class="p">.</span><span class="n" style="color: #333;">_urlpath</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"s3://test_bucket/file.parquet"</span></span>
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<pre style="margin: 0;"> <span id="LC808" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#9bbcfca3f5b799f8d1f34f1469a06de6696cd072"><strong>intake/catalog/tests/test_parameters.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">intake</span></span>
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3
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.catalog.local</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">LocalCatalogEntry</span><span class="p">,</span> <span class="n" style="color: #333;">UserParameter</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.source.base</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DataSource</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -163,6 +164,19 @@ def test_validate_par():</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">kwargs</span><span class="p">[</span><span class="s" style="color: #d14;">'arg1'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span> <span class="c1" style="color: #998; font-style: italic;"># a number, not str</span></span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"></span>
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="python"></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_mlist_parameter</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;">up</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UserParameter</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"mlist"</span><span class="p">,</span> <span class="n" style="color: #333;">allowed</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"a"</span><span class="p">,</span> <span class="s" style="color: #d14;">"b"</span><span class="p">])</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">([])</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">([</span><span class="s" style="color: #d14;">'b'</span><span class="p">])</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">([</span><span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="s" style="color: #d14;">'a'</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">([</span><span class="s" style="color: #d14;">"c"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">([</span><span class="s" style="color: #d14;">"a"</span><span class="p">,</span> <span class="s" style="color: #d14;">"c"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">TypeError</span><span class="p">):</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="python"> <span class="n" style="color: #333;">up</span><span class="p">.</span><span class="n" style="color: #333;">validate</span><span class="p">(</span><span class="s" style="color: #d14;">"hello"</span><span class="p">)</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_explicit_overrides</span><span class="p">():</span></span>
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"> <span class="n" style="color: #333;">e</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">LocalCatalogEntry</span><span class="p">(</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="n" style="color: #333;">driver</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'arg1'</span><span class="p">:</span> <span class="s" style="color: #d14;">"oi"</span><span class="p">})</span></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">e</span><span class="p">(</span><span class="n" style="color: #333;">arg1</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'hi'</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -204,3 +218,20 @@ def test_unknown():</td>
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204
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="python"> <span class="n" style="color: #333;">parameters</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">up</span><span class="p">])</span></span>
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205
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="python"> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">e</span><span class="p">()</span></span>
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206
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">kwargs</span><span class="p">[</span><span class="s" style="color: #d14;">'arg1'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span></span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="python"></span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_catalog_passthrough</span><span class="p">():</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"> <span class="n" style="color: #333;">root</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">)))</span></span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"> <span class="n" style="color: #333;">cat</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root</span><span class="p">,</span> <span class="s" style="color: #d14;">"tests/catalog_inherit_params.yml"</span><span class="p">))</span></span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">subcat</span><span class="p">.</span><span class="n" style="color: #333;">user_parameters</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">{</span><span class="s" style="color: #d14;">"bucket"</span><span class="p">,</span> <span class="s" style="color: #d14;">"inner"</span><span class="p">}</span></span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">subcat</span><span class="p">.</span><span class="n" style="color: #333;">ex2</span><span class="p">.</span><span class="n" style="color: #333;">urlpath</span></span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"test_bucket/test_name"</span></span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">subcat</span><span class="p">.</span><span class="n" style="color: #333;">ex2</span><span class="p">(</span><span class="n" style="color: #333;">bucket</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"hi"</span><span class="p">,</span> <span class="n" style="color: #333;">inner</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"ho"</span><span class="p">).</span><span class="n" style="color: #333;">urlpath</span></span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"hi/ho"</span></span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="python"></span>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># test clone</span></span>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="python"> <span class="n" style="color: #333;">cat2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat</span><span class="p">(</span><span class="n" style="color: #333;">bucket</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"yet"</span><span class="p">)</span></span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat2</span><span class="p">.</span><span class="n" style="color: #333;">subcat</span><span class="p">(</span><span class="n" style="color: #333;">inner</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"another"</span><span class="p">).</span><span class="n" style="color: #333;">ex2</span><span class="p">.</span><span class="n" style="color: #333;">urlpath</span></span>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"yet/another"</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat2</span><span class="p">.</span><span class="n" style="color: #333;">subcat</span><span class="p">(</span><span class="n" style="color: #333;">inner</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"another"</span><span class="p">).</span><span class="n" style="color: #333;">ex2</span><span class="p">(</span><span class="n" style="color: #333;">bucket</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"hi"</span><span class="p">).</span><span class="n" style="color: #333;">urlpath</span></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"hi/another"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#e5ddd175dfbd679fb6c543cbafec0457247d931d"><strong>intake/catalog/tests/test_reload_integration.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,9 +45,9 @@ sources:</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> description: example1 source plugin</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"> driver: example1</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> args: {}</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;"><span class="idiff left right"> </span>'''</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;">'''</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">time</span><span class="p">.</span><span class="n" style="color: #333;">sleep</span><span class="p">(</span><span class="mi" style="color: #099;"><span class="idiff left right">2</span></span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">time</span><span class="p">.</span><span class="n" style="color: #333;">sleep</span><span class="p">(</span><span class="mi" style="color: #099;"><span class="idiff left right">1</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"> <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">intake_server</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">remove</span><span class="p">(</span><span class="n" style="color: #333;">fullname</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -59,22 +59,13 @@ def test_reload_updated_config(intake_server_with_config):</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">entries</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">catalog</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">entries</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="s" style="color: #d14;">'use_example1'</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">TMP_DIR</span><span class="p">,</span> <span class="n" style="color: #333;">YAML_FILENAME</span><span class="p">),</span> <span class="s" style="color: #d14;">'<span class="idiff left right">w</span>'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">TMP_DIR</span><span class="p">,</span> <span class="n" style="color: #333;">YAML_FILENAME</span><span class="p">),</span> <span class="s" style="color: #d14;">'<span class="idiff left right">a</span>'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"> <span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'''</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="python"><span class="s" style="color: #d14;">plugins:</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="python"><span class="s" style="color: #d14;"> source:</span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="python"><span class="s" style="color: #d14;"> - module: intake.catalog.tests.example1_source</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python"><span class="s" style="color: #d14;"> - module: intake.catalog.tests.example_plugin_dir.example2_source</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="python"><span class="s" style="color: #d14;">sources:</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="python"><span class="s" style="color: #d14;"> use_example1:</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python"><span class="s" style="color: #d14;"> description: example1 source plugin</span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="python"><span class="s" style="color: #d14;"> driver: example1</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="python"><span class="s" style="color: #d14;"> args: {}</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"><span class="s" style="color: #d14;"> use_example1_1:</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"><span class="s" style="color: #d14;"> description: example1 other</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"><span class="s" style="color: #d14;"> driver: example1</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"><span class="s" style="color: #d14;"> args: {}</span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="python"><span class="s" style="color: #d14;"><span class="idiff left right"> </span>'''</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"><span class="s" style="color: #d14;">'''</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"> <span class="n" style="color: #333;">time</span><span class="p">.</span><span class="n" style="color: #333;">sleep</span><span class="p">(</span><span class="mf" style="color: #099;">1.2</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#edc153211b31365ad54c2066380f432fb7e5a779"><strong>intake/catalog/tests/test_utils.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,3 +40,18 @@ def test_coerce_datetime(test_input, expected):</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_flatten</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">utils</span><span class="p">.</span><span class="n" style="color: #333;">flatten</span><span class="p">([[</span><span class="s" style="color: #d14;">"hi"</span><span class="p">],</span> <span class="p">[</span><span class="s" style="color: #d14;">"oi"</span><span class="p">]]))</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="s" style="color: #d14;">'hi'</span><span class="p">,</span> <span class="s" style="color: #d14;">'oi'</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="s" style="color: #d14;">"value,dtype,expected"</span><span class="p">,</span> <span class="p">[</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">"int"</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="s" style="color: #d14;">"int"</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">"str"</span><span class="p">,</span> <span class="s" style="color: #d14;">"1"</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="p">((),</span> <span class="s" style="color: #d14;">"list"</span><span class="p">,</span> <span class="p">[]),</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="p">),</span> <span class="s" style="color: #d14;">"list"</span><span class="p">,</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]),</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="p">),</span> <span class="s" style="color: #d14;">"list[str]"</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">"1"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_coerce</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">expected</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">utils</span><span class="p">.</span><span class="nb" style="color: #0086b3;">coerce</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">expected</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">type</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">type</span><span class="p">(</span><span class="n" style="color: #333;">expected</span><span class="p">)</span></span></pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,6 +5,8 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The full license is in the LICENSE file, distributed with this software.</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#-----------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">ast</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">collections.abc</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Iterable</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">functools</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">itertools</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">jinja2</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Environment</span><span class="p">,</span> <span class="n" style="color: #333;">meta</span><span class="p">,</span> <span class="n" style="color: #333;">Undefined</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -299,6 +301,11 @@ def coerce(dtype, value):</td>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="python"><span class="s" style="color: #d14;"> type constructor is returned. Otherwise, the type constructor converts</span></span>
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302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="python"><span class="s" style="color: #d14;"> and returns the value.</span></span>
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301
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303
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"["</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dtype</span><span class="p">:</span></span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"["</span><span class="p">)</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="python"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inner</span><span class="p">.</span><span class="n" style="color: #333;">rstrip</span><span class="p">(</span><span class="s" style="color: #d14;">"]"</span><span class="p">)</span></span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="python"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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302
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309
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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303
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310
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">value</span></span>
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311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">type</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">).</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">dtype</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -306,11 +313,21 @@ def coerce(dtype, value):</td>
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"mlist"</span><span class="p">:</span></span>
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314
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">tuple</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)):</span></span>
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308
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315
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">):</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">TypeError</span><span class="p">(</span><span class="s" style="color: #d14;">"Will not coerce value %s to list"</span><span class="p">,</span> <span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="python"> <span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ast</span><span class="p">.</span><span class="n" style="color: #333;">literal_eval</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ValueError</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">"Failed to coerce string to list"</span><span class="p">)</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">e</span></span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">value</span></span>
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="python"> <span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">COERCION_RULES</span><span class="p">[</span><span class="n" style="color: #333;">dtype</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">op</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">value</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">op</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">op</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">value</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">op</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">inner</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO: recurse into coerce here, to allow list[list[str]] and such?</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="n" style="color: #333;">k</span><span class="p">:</span> <span class="n" style="color: #333;">COERCION_RULES</span><span class="p">[</span><span class="n" style="color: #333;">inner</span><span class="p">](</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()}</span></span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">tuple</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">))</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">inner</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">op</span><span class="p">(</span><span class="n" style="color: #333;">COERCION_RULES</span><span class="p">[</span><span class="n" style="color: #333;">inner</span><span class="p">](</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">out</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">out</span></span>
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<pre style="margin: 0;"> <span id="LC331" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC332" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC333" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">RemoteCatalogError</span><span class="p">(</span><span class="nb" style="color: #0086b3;">Exception</span><span class="p">):</span></span>
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<li id="9d63018462e0d56aaa3fdf1e300112bc29af32ab">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#9d63018462e0d56aaa3fdf1e300112bc29af32ab"><strong>intake/cli/client/subcommands/drivers.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -75,8 +75,13 @@ class Drivers(Subcommand):</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">fmt</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'{name:<30}{cls.__module__}.{cls.__name__}'</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">drivers_by_name</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autodiscover</span><span class="p">()</span> <span class="c1" style="color: #998; font-style: italic;"># dict mapping name to driver</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">all_drivers</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autodiscover_all</span><span class="p">()</span> <span class="c1" style="color: #998; font-style: italic;"># listof (name, driver)</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">direct</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="n" style="color: #333;">k</span><span class="p">:</span> <span class="n" style="color: #333;">v</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">v</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">registry</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">k</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">all_drivers</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">k</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">drivers_by_name</span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">direct</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{}</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">registry</span><span class="p">:</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">k</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">all_drivers</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">k</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">drivers_by_name</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">direct</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">registry</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ImportError</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"Direct:"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">file</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stderr</span><span class="p">)</span></span>
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82
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"> <span class="n" style="color: #333;">none</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#001c005db53f5ed3b331d305e31e57c6eeef0a6f"><strong>intake/conftest.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,15 +9,18 @@ import os</td>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">subprocess</span></span>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">time</span></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">posixpath</span></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">requests</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">tempfile</span></span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">config</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">config</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">open_catalog</span></span></span>
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16
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.container</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">persist</span></span>
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17
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.util_tests</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">ex</span><span class="p">,</span> <span class="n" style="color: #333;">PY2</span></span>
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18
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">make_path_posix</span></span>
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19
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.source.base</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DataSource</span><span class="p">,</span> <span class="n" style="color: #333;">Schema</span></span>
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20
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">register_driver</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.tests.test_utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">copy_test_file</span></span>
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21
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"></span>
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"><span class="n" style="color: #333;">here</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -201,3 +204,29 @@ def env(temp_cache, tempdir):</td>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="p">[</span><span class="s" style="color: #d14;">"INTAKE_CONF_DIR"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">config</span><span class="p">.</span><span class="n" style="color: #333;">confdir</span></span>
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202
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="p">[</span><span class="s" style="color: #d14;">'INTAKE_CACHE_DIR'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">config</span><span class="p">.</span><span class="n" style="color: #333;">conf</span><span class="p">[</span><span class="s" style="color: #d14;">'cache_dir'</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">env</span></span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="python"></span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span></span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">inherit_params_cat</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">tempfile</span><span class="p">.</span><span class="n" style="color: #333;">TemporaryDirectory</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tmp_dir</span><span class="p">:</span></span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="python"> <span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posixpath</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">tmp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"intake"</span><span class="p">)</span></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="python"> <span class="n" style="color: #333;">target_catalog</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_inherit_params.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">target_catalog</span><span class="p">)</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="python"></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="python"></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">inherit_params_multiple_cats</span><span class="p">():</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">tempfile</span><span class="p">.</span><span class="n" style="color: #333;">TemporaryDirectory</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tmp_dir</span><span class="p">:</span></span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="python"> <span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posixpath</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">tmp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"intake"</span><span class="p">)</span></span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="python"> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_inherit_params.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python"> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_nested_sub.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"/*.yml"</span><span class="p">)</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"></span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"></span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span></span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">inherit_params_subcat</span><span class="p">():</span></span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">tempfile</span><span class="p">.</span><span class="n" style="color: #333;">TemporaryDirectory</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tmp_dir</span><span class="p">:</span></span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posixpath</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">tmp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"intake"</span><span class="p">)</span></span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python"> <span class="n" style="color: #333;">target_catalog</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_inherit_params.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="python"> <span class="n" style="color: #333;">copy_test_file</span><span class="p">(</span><span class="s" style="color: #d14;">"catalog_nested_sub.yml"</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span></span>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">open_catalog</span><span class="p">(</span><span class="n" style="color: #333;">target_catalog</span><span class="p">)</span></span></pre>
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<li id="823c8c89ee5c4e1ea98ceee8b34eef1f7946f392">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#823c8c89ee5c4e1ea98ceee8b34eef1f7946f392"><strong>intake/source/discovery.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -141,7 +141,7 @@ def autodiscover(path=None, plugin_prefix='intake_', do_package_scan=False):</td>
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141
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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142
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">drivers</span><span class="p">[</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_load_entrypoint</span><span class="p">(</span><span class="n" style="color: #333;">entrypoint</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="n" style="color: #333;">ConfigurationError</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left right">exception</span></span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left right">debug</span></span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"> <span class="s" style="color: #d14;">"Error while loading entrypoint %s"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -218,7 +218,7 @@ def autodiscover_all(path=None, plugin_prefix='intake_', do_package_scan=True):</td>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="python"> <span class="n" style="color: #333;">drivers</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">((</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">_load_entrypoint</span><span class="p">(</span><span class="n" style="color: #333;">entrypoint</span><span class="p">)))</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="n" style="color: #333;">ConfigurationError</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left right">exception</span></span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="python"> <span class="n" style="color: #333;">logger</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left right">debug</span></span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="python"> <span class="s" style="color: #d14;">"Error while loading entrypoint %s"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="python"> <span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="python"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -245,10 +245,10 @@ def _load_entrypoint(entrypoint):</td>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">load</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;"><span class="idiff left right">ModuleNotFound</span>Error</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">err</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;"><span class="idiff left right">Import</span>Error</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">err</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="n" style="color: #333;">ConfigurationError</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"Failed to load </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> driver because module "</span></span>
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">module_name</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> could not be <span class="idiff left right">foun</span>d."</span><span class="p">)</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">err</span></span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">module_name</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> could not be <span class="idiff left right">importe</span>d."</span><span class="p">)</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">err</span></span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">AttributeError</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">err</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="n" style="color: #333;">ConfigurationError</span><span class="p">(</span></span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"Failed to load </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">entrypoint</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> driver because no object "</span></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#c698b311ba3349ee5d3be02673b49cbcd489924c"><strong>intake/source/jsonfiles.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">contextlib</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">json</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">itertools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">islice</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.source.base</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DataSource</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">JSONFileSource</span><span class="p">(</span><span class="n" style="color: #333;">DataSource</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="s" style="color: #d14;"> Read JSON files as a single dictionary or list</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="s" style="color: #d14;"> The files can be local or remote. Extra parameters for encoding, etc.,</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="s" style="color: #d14;"> go into ``storage_options``.</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"json"</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.0.1"</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">container</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"python"</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">text_mode</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">bool</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">text_encoding</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"utf8"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">compression</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">read</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">bool</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">dict</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">storage_options</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">dict</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"><span class="s" style="color: #d14;"> urlpath : str</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"><span class="s" style="color: #d14;"> Target file. Can include protocol specified (e.g., "s3://").</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="s" style="color: #d14;"> text_mode : bool</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"><span class="s" style="color: #d14;"> Whether to open the file in text mode, recoding binary</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"><span class="s" style="color: #d14;"> characters on the fly</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"><span class="s" style="color: #d14;"> text_encoding : str</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"><span class="s" style="color: #d14;"> If text_mode is True, apply this encoding. UTF* is by far the most</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"><span class="s" style="color: #d14;"> common</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"><span class="s" style="color: #d14;"> compression : str or None</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"><span class="s" style="color: #d14;"> If given, decompress the file with the given codec on load. Can</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;"> be something like "zip", "gzip", "bz2", or to try to guess from the</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="s" style="color: #d14;"> filename, 'infer'</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> storage_options: dict</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"> Options to pass to the file reader backend, including text-specific</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> encoding arguments, and parameters specific to the remote</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;"> file-system driver, if using.</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">fsspec.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">compressions</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"> <span class="n" style="color: #333;">VALID_COMPRESSIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">compressions</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">())</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">[</span><span class="s" style="color: #d14;">"infer"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_urlpath</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">urlpath</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_storage_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">storage_options</span> <span class="ow" style="font-weight: 600;">or</span> <span class="p">{}</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_dataframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_file</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">compression</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compression</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">VALID_COMPRESSIONS</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"Compression value </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">compression</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> must be one of </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">VALID_COMPRESSIONS</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">mode</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"rt"</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">text_mode</span> <span class="k" style="font-weight: 600;">else</span> <span class="s" style="color: #d14;">"rb"</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">encoding</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">text_encoding</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_read</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">read</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">JSONFileSource</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">).</span><span class="n" style="color: #333;">__init__</span><span class="p">(</span><span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">read</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">fsspec</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_get_cache</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_urlpath</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">fsspec</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">mode</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">encoding</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">encoding</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">compression</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="o" style="font-weight: 600;">**</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_storage_options</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">load</span><span class="p">(</span><span class="n" style="color: #333;">f</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">JSONLinesFileSource</span><span class="p">(</span><span class="n" style="color: #333;">DataSource</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"><span class="s" style="color: #d14;"> Read a JSONL (https://jsonlines.org/) file and return a list of objects,</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"><span class="s" style="color: #d14;"> each being valid json object (e.g. a dictionary or list)</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"jsonl"</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.0.1"</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"> <span class="n" style="color: #333;">container</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"python"</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">,</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">,</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="n" style="color: #333;">text_mode</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">bool</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">text_encoding</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"utf8"</span><span class="p">,</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">compression</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="n" style="color: #333;">read</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">bool</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">dict</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">storage_options</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">dict</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"><span class="s" style="color: #d14;"> urlpath : str</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"><span class="s" style="color: #d14;"> Target file. Can include protocol specified (e.g., "s3://").</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"><span class="s" style="color: #d14;"> text_mode : bool</span></span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"><span class="s" style="color: #d14;"> Whether to open the file in text mode, recoding binary</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"><span class="s" style="color: #d14;"> characters on the fly</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"><span class="s" style="color: #d14;"> text_encoding : str</span></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"><span class="s" style="color: #d14;"> If text_mode is True, apply this encoding. UTF* is by far the most</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"><span class="s" style="color: #d14;"> common</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"><span class="s" style="color: #d14;"> compression : str or None</span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"><span class="s" style="color: #d14;"> If given, decompress the file with the given codec on load. Can</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"><span class="s" style="color: #d14;"> be something like "zip", "gzip", "bz2", or to try to guess from the</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"><span class="s" style="color: #d14;"> filename, 'infer'.</span></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"><span class="s" style="color: #d14;"> storage_options: dict</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"><span class="s" style="color: #d14;"> Options to pass to the file reader backend, including text-specific</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"><span class="s" style="color: #d14;"> encoding arguments, and parameters specific to the remote</span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"><span class="s" style="color: #d14;"> file-system driver, if using.</span></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">fsspec.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">compressions</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">VALID_COMPRESSIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">compressions</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">())</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">[</span><span class="s" style="color: #d14;">"infer"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_urlpath</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">urlpath</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_storage_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">storage_options</span> <span class="ow" style="font-weight: 600;">or</span> <span class="p">{}</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_dataframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_file</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">compression</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compression</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">VALID_COMPRESSIONS</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="sa">f</span><span class="s" style="color: #d14;">"Compression value </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">compression</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;"> must be one of </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">VALID_COMPRESSIONS</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="p">)</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">mode</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"rt"</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">text_mode</span> <span class="k" style="font-weight: 600;">else</span> <span class="s" style="color: #d14;">"rb"</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">encoding</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">text_encoding</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_read</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">read</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">().</span><span class="n" style="color: #333;">__init__</span><span class="p">(</span><span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"> <span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">contextlib</span><span class="p">.</span><span class="n" style="color: #333;">contextmanager</span></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_open</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"><span class="s" style="color: #d14;"> Yields an fsspec.OpenFile object</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">fsspec</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_get_cache</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_urlpath</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">fsspec</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python"> <span class="n" style="color: #333;">urlpath</span><span class="p">,</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">mode</span><span class="p">,</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">encoding</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">encoding</span><span class="p">,</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="python"> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">compression</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"> <span class="o" style="font-weight: 600;">**</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_storage_options</span><span class="p">,</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="python"> <span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"> <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">f</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="python"></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">read</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_open</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">loads</span><span class="p">,</span> <span class="n" style="color: #333;">f</span><span class="p">))</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="python"></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">head</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">nrows</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">int</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">100</span><span class="p">):</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="python"><span class="s" style="color: #d14;"> return the first `nrows` lines from the file</span></span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_open</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">loads</span><span class="p">,</span> <span class="n" style="color: #333;">islice</span><span class="p">(</span><span class="n" style="color: #333;">f</span><span class="p">,</span> <span class="n" style="color: #333;">nrows</span><span class="p">)))</span></span></pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -53,7 +53,7 @@ def test_discover_cli(extra_pythonpath, tmp_config_path):</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">check_output</span><span class="p">(</span><span class="n" style="color: #333;">shlex</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"> <span class="s" style="color: #d14;">"intake drivers list"</span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="python"> <span class="p">),</span> <span class="n" style="color: #333;">stderr</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">STDOUT</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="p">),</span> <span class="n" style="color: #333;">stderr</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">STDOUT</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">env</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="n" style="color: #333;"><span class="idiff right">env</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="sa">b</span><span class="s" style="color: #d14;">'foo'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">out</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'Not enabled'</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'foo'</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#f362c4e5ead313f545a5e98899c781dd5524beb4"><strong>intake/source/tests/test_json.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -----------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Copyright (c) 2012 - 2021, Anaconda, Inc. and Intake contributors</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># All rights reserved.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The full license is in the LICENSE file, distributed with this software.</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -----------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">json</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">pathlib</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Path</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">typing</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Dict</span><span class="p">,</span> <span class="n" style="color: #333;">Optional</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">fsspec</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">open_files</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">fsspec.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">compressions</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.source.jsonfiles</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">JSONFileSource</span><span class="p">,</span> <span class="n" style="color: #333;">JSONLinesFileSource</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="n" style="color: #333;">here</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"><span class="n" style="color: #333;">EXTENSIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">compression</span><span class="p">:</span> <span class="sa">f</span><span class="s" style="color: #d14;">".</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">extension</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">extension</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">compressions</span><span class="p">.</span><span class="n" style="color: #333;">items</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span><span class="p">(</span><span class="n" style="color: #333;">params</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="s" style="color: #d14;">"gzip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"bz2"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">json_file</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="nb" style="color: #0086b3;">str</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"hello"</span><span class="p">:</span> <span class="s" style="color: #d14;">"world"</span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">file_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">/</span> <span class="s" style="color: #d14;">"1.json"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">file_path</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">EXTENSIONS</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">.</span><span class="n" style="color: #333;">param</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">open_files</span><span class="p">([</span><span class="n" style="color: #333;">file_path</span><span class="p">],</span> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"wt"</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">request</span><span class="p">.</span><span class="n" style="color: #333;">param</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">dumps</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">file_path</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span><span class="p">(</span><span class="n" style="color: #333;">params</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="s" style="color: #d14;">"gzip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"bz2"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">jsonl_file</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_path</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="nb" style="color: #0086b3;">str</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[{</span><span class="s" style="color: #d14;">"hello"</span><span class="p">:</span> <span class="s" style="color: #d14;">"world"</span><span class="p">},</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]]</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">file_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">tmp_path</span> <span class="o" style="font-weight: 600;">/</span> <span class="s" style="color: #d14;">"1.jsonl"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">file_path</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">EXTENSIONS</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">.</span><span class="n" style="color: #333;">param</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">open_files</span><span class="p">([</span><span class="n" style="color: #333;">file_path</span><span class="p">],</span> <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"wt"</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">request</span><span class="p">.</span><span class="n" style="color: #333;">param</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">f</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">dumps</span><span class="p">(</span><span class="n" style="color: #333;">row</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">row</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">data</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">file_path</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_jsonfile</span><span class="p">(</span><span class="n" style="color: #333;">json_file</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">JSONFileSource</span><span class="p">(</span><span class="n" style="color: #333;">json_file</span><span class="p">,</span> <span class="n" style="color: #333;">text_mode</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"infer"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">j</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">[</span><span class="s" style="color: #d14;">"hello"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"world"</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_jsonlfile</span><span class="p">(</span><span class="n" style="color: #333;">jsonl_file</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">JSONLinesFileSource</span><span class="p">(</span><span class="n" style="color: #333;">jsonl_file</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"infer"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">j</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="s" style="color: #d14;">"hello"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"world"</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_jsonl_head</span><span class="p">(</span><span class="n" style="color: #333;">jsonl_file</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">JSONLinesFileSource</span><span class="p">(</span><span class="n" style="color: #333;">jsonl_file</span><span class="p">,</span> <span class="n" style="color: #333;">compression</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"infer"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">j</span><span class="p">.</span><span class="n" style="color: #333;">head</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">)</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="s" style="color: #d14;">"hello"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"world"</span></span></pre>
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<li id="24375736fa4da820948ba0f6c94dca8711933d50">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#24375736fa4da820948ba0f6c94dca8711933d50"><strong>intake/source/tests/test_tiled.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">intake</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">shlex</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">subprocess</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">time</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">importorskip</span><span class="p">(</span><span class="s" style="color: #d14;">"tiled"</span><span class="p">)</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">httpx</span> <span class="c1" style="color: #998; font-style: italic;"># required by tiled, so will be here</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">fixture</span><span class="p">()</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">server</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="n" style="color: #333;">cmd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">shlex</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"tiled serve pyobject --public tiled.examples.generated:tree"</span><span class="p">)</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"> <span class="n" style="color: #333;">P</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="p">.</span><span class="n" style="color: #333;">Popen</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">)</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"http://localhost:8000"</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"> <span class="n" style="color: #333;">timeout</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">10</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"> <span class="k" style="font-weight: 600;">while</span> <span class="bp" style="color: #999;">True</span><span class="p">:</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">httpx</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">url</span><span class="p">)</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">r</span><span class="p">.</span><span class="n" style="color: #333;">status_code</span> <span class="o" style="font-weight: 600;">--</span> <span class="mi" style="color: #099;">200</span><span class="p">:</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span><span class="p">:</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">timeout</span> <span class="o" style="font-weight: 600;">-=</span> <span class="mf" style="color: #099;">0.1</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">timeout</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"timeout waiting for Tiled server"</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">time</span><span class="p">.</span><span class="n" style="color: #333;">sleep</span><span class="p">(</span><span class="mf" style="color: #099;">0.1</span><span class="p">)</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">url</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">terminate</span><span class="p">()</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">wait</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_simple</span><span class="p">(</span><span class="n" style="color: #333;">server</span><span class="p">):</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">cat</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">intake</span><span class="p">.</span><span class="n" style="color: #333;">open_tiled_cat</span><span class="p">(</span><span class="n" style="color: #333;">server</span><span class="p">)</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cat</span><span class="p">.</span><span class="n" style="color: #333;">tiny_image</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">()</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#a4086bb2c2c81e4edbcd5e46b743cf8db8ea748f"><strong>intake/source/tiled.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">tiled.client</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">from_uri</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">tiled.client.node</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Node</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.catalog</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Catalog</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">intake.source</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DataSource</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TiledCatalog</span><span class="p">(</span><span class="n" style="color: #333;">Catalog</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"> <span class="s" style="color: #d14;">"""View Tiled server as a catalog</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="s" style="color: #d14;"> See the documentation for setting up such a server at</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="s" style="color: #d14;"> https://blueskyproject.io/tiled/</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="s" style="color: #d14;"> A tiled server may contain sources of dataframe, array or xarray type.</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="s" style="color: #d14;"> This driver exposes the full tree as exposed by the server, but you</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="s" style="color: #d14;"> can also specify the sub-path of that tree.</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"tiled_cat"</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">server</span><span class="p">,</span> <span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"><span class="s" style="color: #d14;"> server: str or tiled.client.node.Node</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"><span class="s" style="color: #d14;"> Location of tiles server. Usually of the form "http[s]://address:port/"</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"><span class="s" style="color: #d14;"> May include a path. If the protocol is "tiled", we assume HTTP</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"><span class="s" style="color: #d14;"> connection. Alternatively, can be a Node instance, already connected</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"><span class="s" style="color: #d14;"> to a server.</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="s" style="color: #d14;"> path: str (optional)</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"><span class="s" style="color: #d14;"> If given, restrict the catalog to this part of the server's catalog</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="s" style="color: #d14;"> tree. Equivalent to extending the server URL.</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">path</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">server</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">server</span><span class="p">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"tiled"</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">uri</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">server</span><span class="p">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">"tiled"</span><span class="p">,</span> <span class="s" style="color: #d14;">"http"</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">uri</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">server</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">client</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">from_uri</span><span class="p">(</span><span class="n" style="color: #333;">uri</span><span class="p">,</span> <span class="s" style="color: #d14;">"dask"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">client</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">server</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">uri</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">server</span><span class="p">.</span><span class="n" style="color: #333;">uri</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">uri</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">uri</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">path</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">client</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">client</span><span class="p">[</span><span class="n" style="color: #333;">path</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">().</span><span class="n" style="color: #333;">__init__</span><span class="p">(</span><span class="n" style="color: #333;">entries</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">client</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"tiled:"</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">uri</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">":"</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)[</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">search</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">query</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"text"</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="s" style="color: #d14;">"""Full text search</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"><span class="s" style="color: #d14;"> Queries other than full text will be added later</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">type</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"text"</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">tiled.queries</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">FullText</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="n" style="color: #333;">q</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">FullText</span><span class="p">(</span><span class="n" style="color: #333;">query</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">NotImplementedError</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">TiledCatalog</span><span class="p">.</span><span class="n" style="color: #333;">from_dict</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="n" style="color: #333;">q</span><span class="p">),</span> <span class="n" style="color: #333;">uri</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">uri</span><span class="p">,</span> <span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__getitem__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">item</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">node</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">_entries</span><span class="p">[</span><span class="n" style="color: #333;">item</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">node</span><span class="p">,</span> <span class="n" style="color: #333;">Node</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">TiledCatalog</span><span class="p">(</span><span class="n" style="color: #333;">node</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">TiledSource</span><span class="p">(</span><span class="n" style="color: #333;">uri</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">uri</span><span class="p">,</span> <span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">item</span><span class="p">,</span> <span class="n" style="color: #333;">instance</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">node</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"><span class="n" style="color: #333;">types</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="s" style="color: #d14;">"DaskArrayClient"</span><span class="p">:</span> <span class="s" style="color: #d14;">"ndarray"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="s" style="color: #d14;">"DaskDataArrayClient"</span><span class="p">:</span> <span class="s" style="color: #d14;">"xarray"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"> <span class="s" style="color: #d14;">"DaskDatasetClient"</span><span class="p">:</span> <span class="s" style="color: #d14;">"xarray"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"> <span class="s" style="color: #d14;">"DaskVariableClient"</span><span class="p">:</span> <span class="s" style="color: #d14;">"xarray"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"> <span class="s" style="color: #d14;">"DaskDataFrameClient"</span><span class="p">:</span> <span class="s" style="color: #d14;">"dataframe"</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TiledSource</span><span class="p">(</span><span class="n" style="color: #333;">DataSource</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="s" style="color: #d14;">"""A source on a Tiled server</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"><span class="s" style="color: #d14;"> The container type of this source is determined at runtime.</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"><span class="s" style="color: #d14;"> The attribute ``.instance`` gives access to the underlying Tiled</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"><span class="s" style="color: #d14;"> API, but most users will only call ``.to_dask()``.</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"tiled"</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">uri</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="n" style="color: #333;">instance</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"><span class="s" style="color: #d14;"> uri: str (optional)</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"><span class="s" style="color: #d14;"> Location of the server. If ``instance`` is given, this is</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"><span class="s" style="color: #d14;"> only used for the repr</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"><span class="s" style="color: #d14;"> pathL str (optional)</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"><span class="s" style="color: #d14;"> Path of the data source within the server tree. If ``instance``</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"><span class="s" style="color: #d14;"> is given, this is only used for the repr</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"><span class="s" style="color: #d14;"> instance: tiled.client.node.None (optional)</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"><span class="s" style="color: #d14;"> The tiled object pointing to the data source; normally created</span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"><span class="s" style="color: #d14;"> by a ``TiledCatalog``</span></span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"><span class="s" style="color: #d14;"> metadata: dict</span></span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"><span class="s" style="color: #d14;"> Extra metadata for this source; metadata will also be provided</span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"><span class="s" style="color: #d14;"> by the server.</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">instance</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">instance</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">from_uri</span><span class="p">(</span><span class="n" style="color: #333;">uri</span><span class="p">,</span> <span class="s" style="color: #d14;">"dask"</span><span class="p">)[</span><span class="n" style="color: #333;">path</span><span class="p">].</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">instance</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">instance</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">md</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">instance</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">metadata</span><span class="p">:</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">md</span><span class="p">.</span><span class="n" style="color: #333;">update</span><span class="p">(</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">().</span><span class="n" style="color: #333;">__init__</span><span class="p">(</span><span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">md</span><span class="p">)</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">path</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">container</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">types</span><span class="p">[</span><span class="nb" style="color: #0086b3;">type</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">instance</span><span class="p">).</span><span class="n" style="color: #333;">__name__</span><span class="p">]</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">discover</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">to_dask</span><span class="p">()</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">dt</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">getattr</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="s" style="color: #d14;">"dtype"</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">getattr</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="s" style="color: #d14;">"dtypes"</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">parts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">getattr</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="s" style="color: #d14;">"npartitions"</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">npartitions</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">dt</span><span class="p">,</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">shape</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">getattr</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">instance</span><span class="p">.</span><span class="n" style="color: #333;">structure</span><span class="p">().</span><span class="n" style="color: #333;">macro</span><span class="p">,</span> <span class="s" style="color: #d14;">"shape"</span><span class="p">,</span> <span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">),</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">npartitions</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">parts</span><span class="p">,</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">to_dask</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># cache this?</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">instance</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">read</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">instance</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">().</span><span class="n" style="color: #333;">compute</span><span class="p">()</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_yaml</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">super</span><span class="p">().</span><span class="n" style="color: #333;">_yaml</span><span class="p">()</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">y</span><span class="p">[</span><span class="s" style="color: #d14;">'sources'</span><span class="p">].</span><span class="n" style="color: #333;">values</span><span class="p">())[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="p">[</span><span class="s" style="color: #d14;">'args'</span><span class="p">].</span><span class="n" style="color: #333;">pop</span><span class="p">(</span><span class="s" style="color: #d14;">'instance'</span><span class="p">)</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">y</span></span></pre>
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<li id="2d8ebd7e8eca4404eb062bd5e5f037fd94573e27">
<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#2d8ebd7e8eca4404eb062bd5e5f037fd94573e27"><strong>intake/tests/catalog_inherit_params.yml</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,3 +32,12 @@ sources:</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="yaml"> <span class="na" style="color: #008080;">default</span><span class="pi">:</span> <span class="s" style="color: #d14;">local_filename.parquet</span></span>
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="yaml"> <span class="na" style="color: #008080;">args</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="yaml"> <span class="na" style="color: #008080;">urlpath</span><span class="pi">:</span> <span class="s" style="color: #d14;">s3://{{bucket}}/{{filename}}</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">subcat</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="yaml"> <span class="na" style="color: #008080;">driver</span><span class="pi">:</span> <span class="s" style="color: #d14;">yaml_file_cat</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="yaml"> <span class="na" style="color: #008080;">args</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="yaml"> <span class="na" style="color: #008080;">path</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">{{CATALOG_DIR}}/catalog_nested_sub.yml"</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="yaml"> <span class="na" style="color: #008080;">user_parameters</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="yaml"> <span class="na" style="color: #008080;">inner</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="yaml"> <span class="na" style="color: #008080;">type</span><span class="pi">:</span> <span class="s" style="color: #d14;">str</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="yaml"> <span class="na" style="color: #008080;">description</span><span class="pi">:</span> <span class="s" style="color: #d14;">description</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="yaml"> <span class="na" style="color: #008080;">default</span><span class="pi">:</span> <span class="s" style="color: #d14;">test_name</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#8baad4fd51da699dfd83100ce6cdd1223d5cf0fd"><strong>intake/tests/catalog_nested_sub.yml</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,8 @@ sources:</td>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="yaml"> <span class="na" style="color: #008080;">driver</span><span class="pi">:</span> <span class="s" style="color: #d14;">csv</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="yaml"> <span class="na" style="color: #008080;">args</span><span class="pi">:</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="yaml"> <span class="na" style="color: #008080;">urlpath</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">"</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="yaml"> <span class="na" style="color: #008080;">ex2</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="yaml"> <span class="na" style="color: #008080;">description</span><span class="pi">:</span> <span class="s" style="color: #d14;">this is a sub-resource</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="yaml"> <span class="na" style="color: #008080;">driver</span><span class="pi">:</span> <span class="s" style="color: #d14;">csv</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="na" style="color: #008080;">args</span><span class="pi">:</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"> <span class="na" style="color: #008080;">urlpath</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">{{bucket}}/{{inner}}"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#19359a61ae2446b51b549167b014da2fcf265768"><strong>requirements.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,5 +2,5 @@ appdirs</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/dask" rel="nofollow noreferrer noopener" target="_blank">dask</a></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/entrypoints" rel="nofollow noreferrer noopener" target="_blank">entrypoints</a></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/pyyaml" rel="nofollow noreferrer noopener" target="_blank">pyyaml</a></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/fsspec" rel="nofollow noreferrer noopener" target="_blank">fsspec</a> >=<span class="idiff left">0</span>.7.<span class="idiff right">4</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/fsspec" rel="nofollow noreferrer noopener" target="_blank">fsspec</a> >=<span class="idiff left">2021</span>.7.<span class="idiff right">0</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/jinja2" rel="nofollow noreferrer noopener" target="_blank">jinja2</a></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#6aed5a26e824adc60b507eec295a869424090e81"><strong>scripts/ci/environment-py37.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@ dependencies:</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">aiohttp</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">flask</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">appdirs</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">dask<span class="idiff left right">=2021.06.0</span></span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">dask</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">jinja2</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">numpy</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">pyyaml</span></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#e7fbf744b401b127202898142bbf959efe8c81cd"><strong>scripts/ci/environment-py39.yml</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,5 +36,8 @@ dependencies:</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">xarray</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">zarr</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">moto</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">httpx</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">typer</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">pip</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">rangehttpserver</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">tiled[all]</span></span></pre>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,10 @@</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The full license is in the LICENSE file, distributed with this software.</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#-----------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">setuptools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">setup</span><span class="p">,</span> <span class="n" style="color: #333;">find_packages</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">setuptools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">find_packages</span><span class="p">,</span> <span class="n" style="color: #333;">setup</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">versioneer</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="n" style="color: #333;">requires</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">line</span><span class="p">.</span><span class="n" style="color: #333;">strip</span><span class="p">()</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">line</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'requirements.txt'</span><span class="p">).</span><span class="n" style="color: #333;">readlines</span><span class="p">()</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,12 +51,16 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"> <span class="s" style="color: #d14;">'yaml_files_cat = intake.catalog.local:YAMLFilesCatalog'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"> <span class="s" style="color: #d14;">'csv = intake.source.csv:CSVSource'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="s" style="color: #d14;">'textfiles = intake.source.textfiles:TextFilesSource'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="s" style="color: #d14;">'json = intake.source.jsonfiles:JSONFileSource'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="s" style="color: #d14;">'jsonl = intake.source.jsonfiles:JSONLinesFileSource'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"> <span class="s" style="color: #d14;">'catalog = intake.catalog.base:Catalog'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"> <span class="s" style="color: #d14;">'intake_remote = intake.catalog.remote:RemoteCatalog'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="s" style="color: #d14;">'numpy = intake.source.npy:NPySource'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="s" style="color: #d14;">'ndzarr = intake.source.zarr:ZarrArraySource'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="s" style="color: #d14;">'zarr_cat = intake.catalog.zarr:ZarrGroupCatalog'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="s" style="color: #d14;">'alias = intake.source.derived:AliasSource'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="s" style="color: #d14;">'tiled_cat = intake.source.tiled:TiledCatalog'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="s" style="color: #d14;">'tiled = intake.source.tiled:TiledSource'</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"> <span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<a href="https://salsa.debian.org/med-team/intake/-/commit/1a4217212c9ae9883f7f88c459fe74fa1658b2f2#ef0ce1af706096d33ecc12f2757a5e1cb91ec6ca"><strong>versioneer.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -339,9 +339,8 @@ def get_config_from_root(root):</td>
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># configparser.NoOptionError (if it lacks "VCS="). See the docstring at</span></span>
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># the top of versioneer.py for instructions on writing your setup.cfg .</span></span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="python"> <span class="n" style="color: #333;">setup_cfg</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root</span><span class="p">,</span> <span class="s" style="color: #d14;">"setup.cfg"</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="python"> <span class="n" style="color: #333;">parser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">configparser</span><span class="p">.</span><span class="n" style="color: #333;">SafeConfigParser</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">setup_cfg</span><span class="p">,</span> <span class="s" style="color: #d14;">"r"</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="python"> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">readfp</span><span class="p">(</span><span class="n" style="color: #333;">f</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="python"> <span class="n" style="color: #333;">parser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">configparser</span><span class="p">.</span><span class="n" style="color: #333;">ConfigParser</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="python"> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">setup_cfg</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="python"> <span class="n" style="color: #333;">VCS</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">"versioneer"</span><span class="p">,</span> <span class="s" style="color: #d14;">"VCS"</span><span class="p">)</span> <span class="c1" style="color: #998; font-style: italic;"># mandatory</span></span>
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get</span><span class="p">(</span><span class="n" style="color: #333;">parser</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">):</span></span>
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