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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmc">Debian Med / kmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/2a4251fe4329447fff04b7fcd520deaf72fb1f00">2a4251fe</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:02:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/6b67d56842b3985d7cd7f49b192ba0f387654f77">6b67d568</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:02:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.2.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/eed2f9edf04cca26949388f0dea503ad3222cf89">eed2f9ed</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:02:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.2.1+dfsg'
Update to upstream version '3.2.1+dfsg'
with Debian dir a3099832d6573efec8c33a78cadad62d76aa88cb</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/d7cedc8799191e47137a6a37e96c5d6b2d369282">d7cedc87</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:02:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing build dependency on dh addon.
Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/9bb70e449b9b7ecbeac6f06e4a9b817ff489dca4">9bb70e44</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:02:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop transition for old debug package migration.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/9281f226d1da6378cab8bdc7007173499a0ab996">9281f226</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:03:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: update Files-Excluded pattern list
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/bc99000dbdafabf120d54e84293a75ffbd6539e8">bc99000d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:30:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh use-shared-libs patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/67428c4c64b2faf9c38295d4c6575ce3992ce505">67428c4c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:30:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh makefile.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/feaf61ecdd375f32b14b901fcc99c20fbd423ff4">feaf61ec</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:30:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh 0005-Add-static-library-target-to-makefile.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/84327f49b371f0d03552f42df18ac31fbfee3028">84327f49</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:30:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh newish_gcc_build_fix.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/4aaa0f8f6c80e5bc84425ce9e82e8501fe5640c2">4aaa0f8f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:31:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh disable-python-bindings.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/96489f64d4208a5649c0e06eff63119962666d74">96489f64</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:31:39+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh spelling.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/531b188bd288b31705beb7ac41b10e064b98d2f8">531b188b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:31:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh simde patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/06541b8bee183d1d64bf7fbba77b5666b069d340">06541b8b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T21:42:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh support-mixed-march.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/2aca69abd5f50b363f4e2c7543763d831085f58a">2aca69ab</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T22:27:39+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Put back missing libkmc.a to "all" target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/8e7461054f06f1eb5f5aa613eeed5c2d903891f2">8e746105</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T22:28:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Put back line lost during simde patch refresh
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/999465e4cf903bba5c0fcb6e7f0c796039c08abf">999465e4</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T23:42:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/t/build-lib: adjust autopkgtest to limitiations
The limitations are imposed through hardwired checks in the code.
There are two of them: the reserved memory must be 2Gio minimum,
and the used of 128 threads maximum.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/1b580302fb0e15ac6cae11f0f3587ce792c0f524">1b580302</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T23:46:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/bc0d17a3c5b851ad3188941104c367f401165bd4">bc0d17a3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-15T23:54:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/ch: added todo
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
<span class="new-file">
+
.github/workflows/main.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
makefile
→
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#700bf6a94d524dd7bc3a87bcbd0995b9da08d203">
debian/patches/0005-Add-static-library-target-to-makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#e5ff61b0915072c63870bb2bf0b473c1c546e5d4">
debian/patches/disable-python-bindings.patch
</a>
</li>
<li class="file-stats">
<a href="#dc053169aa7f9d53c38ea6df4723f4380e6fd5cb">
debian/patches/makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#575ec0a4aece2f5a2b68dfb6fd0bffd6352338e0">
debian/patches/newish_gcc_build_fix.patch
</a>
</li>
<li class="file-stats">
<a href="#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2">
debian/patches/simde
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#592bfed8c90f13eb4283daf7ea042adb9740b080">
debian/patches/support-mixed-march.patch
</a>
</li>
<li class="file-stats">
<a href="#d23e6caa00d3353607928a1e45041133144565a1">
debian/patches/use-shared-libs
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#181f11327f8d244d67aab845056d5536f09b2ccb">
debian/tests/build-lib
</a>
</li>
<li class="file-stats">
<a href="#a11a1015efbe262b78f0c3fe84acf63c5839a3b8">
kmer_counter.sln
→
kmc.sln
</a>
</li>
<li class="file-stats">
<a href="#24c57f0139c3acaca2c9a86a05c283f2d8152526">
<span class="new-file">
+
kmc_CLI/kmc.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#aefa0283e0f77e7e55ec6e9aec1c7604df33e73e">
<span class="new-file">
+
kmc_CLI/kmc_CLI.vcxproj
</span>
</a>
</li>
<li class="file-stats">
<a href="#23f8475e66fa26caaf19f8f184be4b733b436cbe">
<span class="new-file">
+
kmc_CLI/kmc_CLI.vcxproj.filters
</span>
</a>
</li>
<li class="file-stats">
<a href="#59c375ba453f4e93c64347d04c32ff06148fdd79">
<span class="new-file">
+
kmc_CLI/kmc_CLI.vcxproj.user
</span>
</a>
</li>
<li class="file-stats">
<a href="#a7ad9ede728ae751fb9621f033a7fc088871b914">
kmc_api/kmc_file.cpp
</a>
</li>
<li class="file-stats">
<a href="#41bc84e3c8178b1776497fc204bb0bc3e15d0840">
kmc_api/kmc_file.h
</a>
</li>
<li class="file-stats">
<a href="#a795b8e411b8dc6ac7952e6db5ddc29bc61e139d">
kmc_api/kmer_api.cpp
</a>
</li>
<li class="file-stats">
<a href="#6a495c064f1ff02ad9ae7d1f8dd46cedab45172a">
kmc_api/kmer_api.h
</a>
</li>
<li class="file-stats">
<a href="#f5259f15cf38fd1223fc86745ea21fa0ac806ac5">
kmc_api/kmer_defs.h
</a>
</li>
<li class="file-stats">
<a href="#3935e0d4ba105bf5068ab24f73870ebfd83ba92d">
kmc_api/mmer.cpp
</a>
</li>
<li class="file-stats">
<a href="#015272f6f6f1532002dcdc804c6c56a128f89c37">
kmc_api/mmer.h
</a>
</li>
<li class="file-stats">
<a href="#b01b22978c5fb121d3f0974e98295cb6c89dc7db">
<span class="deleted-file">
−
kmc_api/stdafx.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#5485270d93b6696e1410e418533de8f86c01c5ff">
kmer_counter/bam_utils.h
→
kmc_core/bam_utils.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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