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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmc">Debian Med / kmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/aaf9a26288f9431379bc698a1b683376f1ebff8d">aaf9a262</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T14:41:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move libkmc_core.a to /usr/lib/<triplet>
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/56543c4b134ceba53132b76b2d0812a293c1dfc2">56543c4b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T14:54:39+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/ch: fix typo caught by lintian. :)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/1fd424231ee34d1e8488b29d5ab0e4d8e739fc76">1fd42423</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T14:59:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control,d/libkmc-dev: don't depend on dh-exec
Thanks to compat level 13, variable expansion is supported in
install files without the need of the legacy helper program.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/66e7679f91b86bc6707d7ad0cb400d114d4e1ac3">66e7679f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T15:01:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deleted newish_gcc_build_fix.patch: applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/e32e847531aad3a9174b35110c9a1bf71c6f22c1">e32e8475</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T15:15:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/d153f3baf218eb1ac65332cf82ec0071b9b939d7">d153f3ba</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-01-16T15:35:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#d8f5909d9ed2af2800dda0b0d85adf8362ae773a">
debian/kmc.install
</a>
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<li class="file-stats">
<a href="#34945cf4b89afff7e267503b6c993487479f546e">
debian/libkmc-dev.install
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<li class="file-stats">
<a href="#575ec0a4aece2f5a2b68dfb6fd0bffd6352338e0">
<span class="deleted-file">
−
debian/patches/newish_gcc_build_fix.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kmc/-/compare/bc0d17a3c5b851ad3188941104c367f401165bd4...d153f3baf218eb1ac65332cf82ec0071b9b939d7#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">kmc (3.2.1+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kmc (3.2.1+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">TODO: relocate spurious library usr/bin/libkmc_core.a</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add missing build dependency on dh addon.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Drop transition for old debug package migration.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * d/copyright: update Files-Excluded pattern list</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Refresh all patches following reorganisation of upstream source code.</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> * d/t/build-lib: adjust autopkgtest to limitiations imposed by upstream:</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Delete newish_gcc_build_fix.patch: applied upstream.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * d/t/build-lib: adjust autopkgtest to limitations imposed by upstream:</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> no less than 2GiB of memory per command and no more than 128 threads.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * d/control,d/libkmc-dev: don't depend on dh-exec thanks to compat 13.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> -- Étienne Mollier <emollier@debian.org> S<span class="idiff left">at</span>, 1<span class="idiff">5</span> Jan 2022 <span class="idiff right">23:44:08</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Étienne Mollier <emollier@debian.org> S<span class="idiff left">un</span>, 1<span class="idiff">6</span> Jan 2022 <span class="idiff right">15:24:16</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">kmc (3.1.1+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,6 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dh-exec,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libbz2-dev,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> help2man,</span>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/bc0d17a3c5b851ad3188941104c367f401165bd4...d153f3baf218eb1ac65332cf82ec0071b9b939d7#d8f5909d9ed2af2800dda0b0d85adf8362ae773a"><strong>debian/kmc.install</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">bin</span><span class="o" style="font-weight: 600;">/*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">bin</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;"># Note: careful not to catch bin/libkmc_core.a</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">bin</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">kmc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">bin</span></span></pre>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/bc0d17a3c5b851ad3188941104c367f401165bd4...d153f3baf218eb1ac65332cf82ec0071b9b939d7#34945cf4b89afff7e267503b6c993487479f546e"><strong>debian/libkmc-dev.install</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/dh-exec</span></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">kmc_api</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">h</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">kmc</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">libkmc</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="no" style="color: #008080;">DEB_HOST_MULTIARCH</span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">bin</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">libkmc</span><span class="o" style="font-weight: 600;">*.</span><span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="no" style="color: #008080;">DEB_HOST_MULTIARCH</span><span class="p">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/bc0d17a3c5b851ad3188941104c367f401165bd4...d153f3baf218eb1ac65332cf82ec0071b9b939d7#575ec0a4aece2f5a2b68dfb6fd0bffd6352338e0"><strong>debian/patches/newish_gcc_build_fix.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: add required header for std::modf</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Author: Sascha Steinbiss <sascha@steinbiss.name></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmc_dump/nc_utils.h</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmc_dump/nc_utils.h</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">@@ -11,6 +11,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> Date : 2022-01-04</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> */</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> </span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <cmath></span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> #include <string></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> #include <cmath></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> #include "../kmc_api/kmer_defs.h"</span></pre>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/bc0d17a3c5b851ad3188941104c367f401165bd4...d153f3baf218eb1ac65332cf82ec0071b9b939d7#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use-shared-libs</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">makefile.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0005-Add-static-library-target-to-makefile.patch</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">newish_gcc_build_fix.patch</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">disable-python-bindings.patch</span>
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6
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">spelling.patch</span>
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7
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">simde</span>
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