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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/probabel">Debian Med / probabel</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/probabel/-/commit/32657c94d2b8ce5139b41b09ba1299adc84c5997">32657c94</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-18T14:13:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really fix watch file
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/probabel/-/commit/31e475792e0edc091938260b29dd318301b5aca2">31e47579</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-18T16:31:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-time test issue reported at
https://github.com/GenABEL-Project/ProbABEL/issues/47
is ignored when building the package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/probabel/-/commit/b1eaedea8e46199b7380b162a358ae12f9255df5">b1eaedea</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-18T16:32:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing build dependency on dh addon.
Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html
</pre>
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<strong><a href="https://salsa.debian.org/med-team/probabel/-/commit/3be7e536abb754582ed22c4895824e10f5b335e5">3be7e536</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-18T16:35:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
<span class="new-file">
+
debian/README.Debian
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#985e60d0e56cad661ee2c83399a26dbec0095f11">
<span class="new-file">
+
debian/patches/ignore_failing_build_time_test.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<h4>Changes:</h4>
<li id="f168b81935360ddcf2dd0f2d4b98b8603829060f">
<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#f168b81935360ddcf2dd0f2d4b98b8603829060f"><strong>debian/README.Debian</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">probabel for Debian</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">===================</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">It seems when using gcc version 11 one of the build time</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">tests is failing. This was reported at</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> https://github.com/GenABEL-Project/ProbABEL/issues/47</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">but there is no solution yet. When building the package this</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">test is ignored but this issue might affect your results.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 11 Oct 2021 11:36:55 +0200</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">probabel (0.5.0+dfsg-5) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">probabel (0.5.0+dfsg-5) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Apply multi-arch hints.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> + probabel-examples: Add Multi-Arch: foreign.</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Build-Depends: r-cran-survival <!nocheck></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> <span class="idiff left right">TODO:</span> Build-time test issue reported at</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> <span class="idiff left right">*</span> Build-time test issue reported at</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> https://github.com/GenABEL-Project/ProbABEL/issues/47</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> is ignored when building the package</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Add missing build dependency on dh addon.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Mon, 11 Oct</span> 202<span class="idiff">1</span> 1<span class="idiff">1</span>:3<span class="idiff">6:55</span> +0<span class="idiff right">2</span>00</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Tue, 18 Jan</span> 202<span class="idiff">2</span> 1<span class="idiff">6</span>:3<span class="idiff">2:14</span> +0<span class="idiff right">1</span>00</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">probabel (0.5.0+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,8 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> texlive-latex-extra,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> texlive-latex-recommended,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> texlive-fonts-recommended,</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> r-cran-survival <!nocheck></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> r-cran-survival <!nocheck>,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> debhelper</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Standards-Version: 4.6.0</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/probabel</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/probabel.git</span>
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<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#985e60d0e56cad661ee2c83399a26dbec0095f11"><strong>debian/patches/ignore_failing_build_time_test.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Build-time test issue reported at</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> https://github.com/GenABEL-Project/ProbABEL/issues/47</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> is failing and was patched out for the moment.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Last-Update: Mon, 11 Oct 2021 11:36:55 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- a/checks/R-tests/run_models_in_R_palinear.R</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/checks/R-tests/run_models_in_R_palinear.R</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -137,5 +137,6 @@</span> for (i in 3:dim(dose)[2]) {</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> colnames(prob.2df.R) <- cols2df</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> rownames(prob.2df.R) <- NULL</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-stopifnot( all.equal(prob.2df.PA, prob.2df.R, tol=tol) )</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-cat("OK\n")</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# stopifnot( all.equal(prob.2df.PA, prob.2df.R, tol=tol) )</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# cat("OK\n")</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+cat("IGNORED\n")</span></span></pre>
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<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">examples.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">c++11.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">ignore_failing_build_time_test.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/probabel/-/compare/7051832e30dde41d09a518c46a6ff7f4384bb01c...3be7e536abb754582ed22c4895824e10f5b335e5#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> https://github.com/GenABEL-Project/ProbABEL/<span class="idiff left right">release</span>s .*/v@ANY_VERSION@@ARCHIVE_EXT@</span></pre>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/GenABEL-Project/ProbABEL/<span class="idiff left">tag</span>s .*/v<span class="idiff right">?</span>@ANY_VERSION@@ARCHIVE_EXT@</span></pre>
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