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<h3>
Andrius Merkys pushed to branch master
at <a href="https://salsa.debian.org/med-team/kallisto">Debian Med / kallisto</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kallisto/-/commit/26171bf7fcaebfcf5d65273134defa768eac92b2">26171bf7</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2022-01-19T02:16:06-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Running tests with snakemake.
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<li>
<strong><a href="https://salsa.debian.org/med-team/kallisto/-/commit/7fe834858cb066fc68add6e171a99e4605caad2f">7fe83485</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2022-01-19T02:23:13-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Snakemake wants to write to $HOME.
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<strong><a href="https://salsa.debian.org/med-team/kallisto/-/commit/83ab006c2f0f2ab2aa9c14b0d3a1fecd67ab52f4">83ab006c</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2022-01-19T02:28:54-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Another way to find built kallisto.
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<strong><a href="https://salsa.debian.org/med-team/kallisto/-/commit/c0b19bd0e6916ca2b20f7f4eb88bb80012cb1cbd">c0b19bd0</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2022-01-19T02:37:43-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog for 0.48.0+dfsg-1 release
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kallisto/-/compare/1e5743ab0d054a3a530ba2322e48f4c92336b43c...c0b19bd0e6916ca2b20f7f4eb88bb80012cb1cbd#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">kallisto (0.48.0+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kallisto (0.48.0+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream version 0.48.0+dfsg</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> * Enabling function testing.</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * Build with tests depend on catch2.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Enabling function and snakemake tests.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Bumping copyright years.</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Refreshing patches, disabling</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> Check_busOptions.seq_length_before_accessing.patch (integrated upstream).</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- Andrius Merkys <merkys@debian.org> Wed, 19 Jan 2022 0<span class="idiff left right">1:19:1</span>8 -0500</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andrius Merkys <merkys@debian.org> Wed, 19 Jan 2022 0<span class="idiff left right">2:36:5</span>8 -0500</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">kallisto (0.46.2+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/kallisto/-/compare/1e5743ab0d054a3a530ba2322e48f4c92336b43c...c0b19bd0e6916ca2b20f7f4eb88bb80012cb1cbd#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,8 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> catch2,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libhdf5-dev,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> libhts-dev</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> libhts-dev,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> snakemake <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/kallisto</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/kallisto.git</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/kallisto/-/compare/1e5743ab0d054a3a530ba2322e48f4c92336b43c...c0b19bd0e6916ca2b20f7f4eb88bb80012cb1cbd#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,3 +13,7 @@ CMAKE_EXTRA_FLAGS += -DDEBIAN_BUILD=1 \</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh_auto_configure -- $(CMAKE_EXTRA_FLAGS)</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) snakemake --cores 1</span></pre>
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