<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c">536690e1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T12:41:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.6.0</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
<span class="new-file">
+
.github/dependabot.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
<span class="new-file">
+
.github/workflows/codeql-analysis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
<span class="new-file">
+
MANIFEST.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#a62b8652a1f9ea532d82804117f6bbdf51425ee7">
common.mk
</a>
</li>
<li class="file-stats">
<a href="#7d3b5f1e5c889e39bf4d713c2727d6b6c122d7de">
<span class="new-file">
+
contrib/admin/buildkit-deployment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#889c91308449c65c309146f6487ae74af64de5e9">
contrib/admin/mypy-with-ignore.py
</a>
</li>
<li class="file-stats">
<a href="#c6db25fe7bc1dcb6cd5cbaf61765735c727bc0dc">
<span class="new-file">
+
contrib/tes/funnel/kubernetes/setup.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b9d018097205ddb620577430a966e6c3752860ba">
<span class="new-file">
+
contrib/typeshed/flask/__init__.pyi
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f3f908b183d93a582e0ae552f418e76c36400c4">
<span class="new-file">
+
contrib/typeshed/flask/helpers.pyi
</span>
</a>
</li>
<li class="file-stats">
<a href="#f250d752488d8f687c57fb0d796da0b79f4e320c">
<span class="new-file">
+
contrib/typeshed/tes/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e01388da7548ef9ec3f232e6e73b8aaa160648f0">
<span class="new-file">
+
contrib/typeshed/tes/client.pyi
</span>
</a>
</li>
<li class="file-stats">
<a href="#5ce2e70464ace850fafe85e7fb7f31795de96287">
<span class="new-file">
+
contrib/typeshed/tes/models.pyi
</span>
</a>
</li>
<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">
docker/Dockerfile.py
</a>
</li>
<li class="file-stats">
<a href="#07f24fcfb8d1eb555c84915da35f0b51883095b6">
docker/singularity-wrapper.sh
</a>
</li>
<li class="file-stats">
<a href="#98b0a1e2c9644c87d8bb8f60a479e7b366cc7607">
docs/appendices/architecture.rst
</a>
</li>
<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
</a>
</li>
<li class="file-stats">
<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0">
docs/contributing/contributing.rst
</a>
</li>
<li class="file-stats">
<a href="#5e25feb6b25012c00d6a27af4470f92ec5ccb67b">
docs/developingWorkflows/developing.rst
</a>
</li>
<li class="file-stats">
<a href="#42fb6e892548da83befd6b9b6ddb7d9a96bab31d">
docs/developingWorkflows/toilAPIMethods.rst
</a>
</li>
<li class="file-stats">
<a href="#9c7786e2c4730fab23a42468d049ec242c297b8c">
docs/gettingStarted/install.rst
</a>
</li>
<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
</li>
<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
docs/running/cloud/kubernetes.rst
</a>
</li>
<li class="file-stats">
<a href="#d50f3b306f058ff65070956e91042db45c249d68">
<span class="new-file">
+
docs/running/server/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#82be9fed605db0614e4f7450c4fdf3ff4a3b8c3e">
<span class="new-file">
+
docs/running/server/docker-compose.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c5d7964ea3686ec9493493d76844305b3f84baab">
<span class="new-file">
+
docs/running/server/wes.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#94ef85ac03a9b3926d1726c51aaf7e720200965d">
<span class="new-file">
+
requirements-aws.txt
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c"}}</script>
</p>
</div>
</body>
</html>