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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c">536690e1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T12:41:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.6.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/24271b4294be111f325082f88dbce2eec07bd418">24271b42</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T12:41:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/5afc675ab3c0e776214e382da6cb8ae8394464cd">5afc675a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T12:41:41+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.6.0'
Update to upstream version '5.6.0'
with Debian dir 2d19b4da72f2e8fb4976b0e44badde69c4d59e8f</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/a43aa9b1d1ca42acaf95558b10733b2966bf85ad">a43aa9b1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T15:13:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches, retiring cwl_test_path, spelling, and test_with_less_memory
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/4107bf8d418c0a82bb253d45c49b7589ef0e5d7a">4107bf8d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T15:13:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/0e65d239eb70650ffa440afb41e4578e6309f2f3">0e65d239</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T15:24:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip the py-tes dependency for now.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/d9fa29c76bc986bb9dc5541996ffa06e3ff7f239">d9fa29c7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-19T15:47:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip testVirtualEnv
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/9d3b57287c4e47a87ed3a15f53b91da4a87bf4a2">9d3b5728</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-21T17:58:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">allow the cwltool version warning
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/d52f271681e6e7685f9a70f5d17966a05a2415e1">d52f2716</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-01-21T18:13:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">match the latest version of cwltool
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
<span class="new-file">
+
.github/dependabot.yml
</span>
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<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
<span class="new-file">
+
.github/workflows/codeql-analysis.yml
</span>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
<span class="new-file">
+
MANIFEST.in
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#a62b8652a1f9ea532d82804117f6bbdf51425ee7">
common.mk
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<li class="file-stats">
<a href="#7d3b5f1e5c889e39bf4d713c2727d6b6c122d7de">
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contrib/admin/buildkit-deployment.yml
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</li>
<li class="file-stats">
<a href="#889c91308449c65c309146f6487ae74af64de5e9">
contrib/admin/mypy-with-ignore.py
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<li class="file-stats">
<a href="#c6db25fe7bc1dcb6cd5cbaf61765735c727bc0dc">
<span class="new-file">
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contrib/tes/funnel/kubernetes/setup.yml
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<li class="file-stats">
<a href="#b9d018097205ddb620577430a966e6c3752860ba">
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contrib/typeshed/flask/__init__.pyi
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<li class="file-stats">
<a href="#9f3f908b183d93a582e0ae552f418e76c36400c4">
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contrib/typeshed/flask/helpers.pyi
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<li class="file-stats">
<a href="#f250d752488d8f687c57fb0d796da0b79f4e320c">
<span class="new-file">
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contrib/typeshed/tes/__init__.py
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<li class="file-stats">
<a href="#e01388da7548ef9ec3f232e6e73b8aaa160648f0">
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contrib/typeshed/tes/client.pyi
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<li class="file-stats">
<a href="#5ce2e70464ace850fafe85e7fb7f31795de96287">
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contrib/typeshed/tes/models.pyi
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#59ad974686407b525dc696c88437dd59de34a805">
<span class="deleted-file">
−
debian/patches/cwl_test_path
</span>
</a>
</li>
<li class="file-stats">
<a href="#32807d9d1af431d92c968d062bb3ab0046c56dd1">
debian/patches/exit_code_exception
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<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#bbcb48e2be151813ceeaaec7eadcaf824b49c1c6">
debian/patches/setting_version.patch
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<li class="file-stats">
<a href="#8f10e7fbf208d7b374153f7fd9e71e1bb75ca9ca">
debian/patches/ship_tests
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<li class="file-stats">
<a href="#d513a04f61fe691629fd043d4da0442b35571986">
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debian/patches/skip_py_tes_dep
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<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
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<li class="file-stats">
<a href="#037df6725949b5d76b6bcc0423f4f7b7f07f1ffa">
debian/patches/soften-pydocker-dep
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debian/patches/spelling
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<li class="file-stats">
<a href="#6187ccefe18309cfee9995c8b0d7b481c9971218">
<span class="deleted-file">
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debian/patches/test_with_less_memory
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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—
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