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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/snpeff">Debian Med / snpeff</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snpeff/-/commit/7f69c16308d39682db6b3fa14ab0806ded383f1c">7f69c163</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2021-04-17T23:03:08+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">snpeff must depend on default-jre
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<li>
<strong><a href="https://salsa.debian.org/med-team/snpeff/-/commit/56143cffc31daf5399a3e9595cca3ad40f1bb7bc">56143cff</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-01-22T14:44:17+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding Apache-2.0 licence in d/copyright
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<strong><a href="https://salsa.debian.org/med-team/snpeff/-/commit/38c74dfb671e9dfd8b055038f3ff8fea54185710">38c74dfb</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2022-01-22T14:58:08+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting Standards version to 4.6.0 (no change)
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<strong><a href="https://salsa.debian.org/med-team/snpeff/-/commit/75f48e58575634541412eb9a2db34497517bfad4">75f48e58</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2022-01-22T15:48:15+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to NEW, targetting experimental
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,4 @@ snpeff (4.3t+dfsg1-1) experimental; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #986141)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> <span class="idiff left">Wed, 31 Mar</span> 202<span class="idiff">1</span> 1<span class="idiff">5:59:41</span> +0<span class="idiff right">2</span>00</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> <span class="idiff left">Sat, 22 Jan</span> 202<span class="idiff">2</span> 1<span class="idiff">4:41:57</span> +0<span class="idiff right">1</span>00</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,7 +34,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libapfloat-java,</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libdistlib-java,</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> scala-library</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.1</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6.0</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/snpeff</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/snpeff.git</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">Homepage: https://pcingola.github.io/SnpEff/</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -63,7 +63,8 @@ Description: genetic variant annotation and effect prediction toolbox - lib</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">Package: snpeff</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext">Depends: ${java:Depends},</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">Depends: default-jre,</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> ${java:Depends},</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> libsnpeff-java (= ${binary:Version})</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext">Suggests: vcfanno</span>
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<a href="https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,6 +37,12 @@ Files: src/main/java/org/broad/tribble/*</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">Copyright: 2007-2009 The Broad Institute, Inc. and the Massachusetts Institute of Technology</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">License: LGPL-2.1</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">Files: src/main/java/org/snpeff/collections/ArrayUtil.java</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> src/main/java/org/snpeff/collections/BitUtil.java</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> src/main/java/org/snpeff/collections/OpenBitSet.java</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">Copyright: Apache Software Foundation</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">License: Apache-2.0</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">Copyright: 2012 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> 2020-2021 Pierre Gruet <pgt@debian.org></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,3 +75,7 @@ License: Expat</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext">License: LGPL-2.1</span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> On Debian systems the full text of the LGPL-3 can be found in</span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> /usr/share/common-licenses/LGPL-2.1</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">License: Apache-2.0</span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> On Debian systems, the full text of the Apache-2.0 license</span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> can be found in the file '/usr/share/common-licenses/Apache-2.0'.</span></pre>
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