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<h3>
Rebecca N. Palmer pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/1ee51741f0daa3440306fbe33c9c7e5dd0ee4066">1ee51741</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-26T21:13:21+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 6.14.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/6dcfe9a3ca7b408501e9a1b18728c334321fc52b">6dcfe9a3</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-26T21:13:41+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/6.14.0'
Update to upstream version '6.14.0'
with Debian dir 7329283f68b9c62ad76d7b9a8b8c85ecd9bbd8cf</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f760386e2035fa291e885f0e566a54ad863c0bdd">f760386e</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-26T21:21:19+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches, update d/copyright.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/9b185d7abae1b2aea82855988551d76cc8cdf7c0">9b185d7a</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-30T21:52:50+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Split up the binary package (main, -doc, -testsuite) to save space;
Tests: skip a new conda-using test, mark as needs-internet.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/7afabe43dcdb3fa1f42c6d641286a1bb912f4e0d">7afabe43</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-30T21:58:37+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't ship the test suite, as some of it doesn't work from a
non-writable directory.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/40b69ed4a7311a3f2c34d9798722200f9207c828">40b69ed4</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-31T19:29:48+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Tests: copy the test tree to avoid writing to it.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/a3140fc0f63518d58a1e37946977ca825b3d840c">a3140fc0</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-31T21:12:34+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Reproducibility: fix sphinx locale, skip a test that fails under faketime.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/1f4fb628f59ccd70805ff2be59ff504b23b67a13">1f4fb628</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2022-01-31T21:43:14+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">salsa-ci: ignore expected Lintian error.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
<span class="deleted-file">
−
debian/docs
</span>
</a>
</li>
<li class="file-stats">
<a href="#28b0709ae4054bc48d823b79dcfc13f75eccbb7e">
debian/patches/fix_test_pytest.patch
</a>
</li>
<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
</a>
</li>
<li class="file-stats">
<a href="#aef4fc475d9c2698d0de9e80b3256895c791f41e">
debian/patches/remove_ccbysa_snippets.patch
</a>
</li>
<li class="file-stats">
<a href="#87ba9cd7574dd1d01d72b7ceb5e99c2bc35089d1">
debian/patches/reproducible-build.patch
</a>
</li>
<li class="file-stats">
<a href="#ff54e47f5e99b8693330287f0cde3307ea689e5d">
debian/patches/test_from_any_directory.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
debian/salsa-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#0c93b2a80978b00125602f492c174bf93da5747d">
debian/snakemake.doc-base
→
debian/snakemake-doc.doc-base
</a>
</li>
<li class="file-stats">
<a href="#d125cc661abf759e97ddea296cdf6becfca72357">
<span class="new-file">
+
debian/snakemake-doc.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#3cdad69834beeda32ac276b211c1aff34cb6d2e7">
debian/snakemake.links
→
debian/snakemake-doc.links
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#9617ea0d5d1a492cd381dd6bb688b8a5cbe6512b">
docs/getting_started/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#970437b3b02619352a63fbf1fff809371104c05f">
docs/project_info/more_resources.rst
</a>
</li>
<li class="file-stats">
<a href="#945ec74fc1c17902d98bca84b7a1f0dfd755c01b">
docs/snakefiles/deployment.rst
</a>
</li>
<li class="file-stats">
<a href="#02739d845044a6cd860043a088ae0a786829cd56">
docs/snakefiles/modularization.rst
</a>
</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
</a>
</li>
<li class="file-stats">
<a href="#a3f7d8116d97086f34b95ab949c6c99128c6713f">
snakemake/benchmark.py
</a>
</li>
<li class="file-stats">
<a href="#5752dcb5dceb2252f447b747551b9e646cf1865e">
snakemake/caching/local.py
</a>
</li>
<li class="file-stats">
<a href="#959b717a57676faf331e51a5fe763a00dea0032d">
snakemake/common/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#42300b585ee7e51f9c6cfad5a88cf8ed5c4bd8fa">
snakemake/cwl.py
</a>
</li>
<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
</a>
</li>
<li class="file-stats">
<a href="#f15af42c37739d075863d61c80d393b9af0c346c">
snakemake/deployment/conda.py
</a>
</li>
<li class="file-stats">
<a href="#2eefc56ce2f64fa1b7c1a3a535061a326d1703e8">
snakemake/deployment/containerize.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/snakemake/-/compare/b21b17a19edfe96b420dfa874189529faeea8637...1f4fb628f59ccd70805ff2be59ff504b23b67a13">View it on GitLab</a>.
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