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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07e7d886197e7a380e8e91ca5d0d26d4f762ef54">07e7d886</a></strong>
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<span>by Andreas Tille</span>
<i>at 2022-02-01T13:42:26+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07e7d886197e7a380e8e91ca5d0d26d4f762ef54#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 01 Feb 2022 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 01 Feb 2022 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">8</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 101 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 55 | {practice,laboratory,covid-19,imaging,his,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> htsjdk | 36 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom<span class="idiff left right">3tools</span> | 27 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom<span class="idiff left right">scope </span> | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> amide | 26 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom<span class="idiff left">scope </span> | 2<span class="idiff right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> orthanc-webviewer | 1<span class="idiff left right">9</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom<span class="idiff left">3tools</span> | 2<span class="idiff right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> orthanc-webviewer | 1<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 15 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 14 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> invesalius | 1<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> invesalius | 1<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> lagan | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> mrtrix3 | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> lagan | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> mrtrix3 | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> openslide | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> orthanc-dicomweb | 9 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> dicomnifti | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> libminc | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> mia | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> nifti2dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> nifticlib | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> nifticlib | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> openslide | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-postgresql | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> pixelmed | 8 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,8 +37,10 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> nifti2dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> salmon | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,7 +48,6 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> king | 5 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> bio-tradis | 4 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,6 +58,7 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> melting | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> mhap | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> nipype | 4 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> oscar | 4 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,6 +71,7 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> arden | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> beast-mcmc | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> biomaj3-cli | 3 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> bitseq | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> blimps | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,7 +90,6 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> orthanc-gdcm | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> orthanc-python | 3 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> oscar | 3 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> proalign | 3 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,7 +102,6 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> thesias | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> anfo | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> assemblytics | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> biomaj3-cli | 2 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> cat-bat | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> cmtk | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> dextractor | 2 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -193,8 +193,8 @@ Last-Update: Tue, 01 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> shovill | 0 | {covid-19,bio} | </span>
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