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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/king">Debian Med / king</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/016db82997b57190a702700439ac4dd04f72d34f">016db829</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-01-30T15:27:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding dependencies to perform the build with newest upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/bfb5a9e59c5d017f7d8c9a4c64724590df48a94c">bfb5a9e5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-01-30T15:27:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/0fc9d62fa321ddf0e30380e6af81cd6dcde1d864">0fc9d62f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-01T22:40:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Changing the path of the build jar in d/king.jlibs file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/9227a458e29742e28308244fe58aa2ae7eb81701">9227a458</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-01T22:44:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Building pdf docs from lyx and tex files, building reproducibly
Providing a Perl script to put the date of the changelog file into the lyx and
tex sources of the documentation, then building them.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/5bf903df26282036c212647dbaf2f4b560cfd9b4">5bf903df</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-02T21:54:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hacking-king.pdf is no more provided
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/king/-/commit/f164a6aff85875960a18697cb032882ecbf2369a">f164a6af</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-02T21:59:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Currently extratools/doc/work/tools-manual.lyx cannot be turned into a pdf file
</pre>
</li>
</ul>
<h4>13 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
<span class="new-file">
+
debian/clean
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#700c026afa14d068427a069d9e1c510c601501b7">
<span class="deleted-file">
−
debian/king.doc-base.extratools
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d16ced22c6c807c5da4908d44201645c1123c1e">
<span class="deleted-file">
−
debian/king.doc-base.hacking-king
</span>
</a>
</li>
<li class="file-stats">
<a href="#30d325dd29368495bd6cdbd6fe640d9d8e67504a">
debian/king.docs
</a>
</li>
<li class="file-stats">
<a href="#a60e1c01e6635b3c33806ae96bb006a68b4b80d4">
debian/king.jlibs
</a>
</li>
<li class="file-stats">
<a href="#cd2e7a1503a7b87582178c3c73725e4d25ab4d8f">
<span class="new-file">
+
debian/makePdfDoc
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4aa46b97d63b9f31fc17c6f5a29fdad281eaabc">
debian/patches/ignore_appbundler.patch
</a>
</li>
<li class="file-stats">
<a href="#e775f430952172d9650980f3dd3b544ca1179e00">
debian/patches/ignore_rdcvis.jar.patch
</a>
</li>
<li class="file-stats">
<a href="#a8ffe3cef0aad045b7ed97f497d7a3e933c0dbb3">
<span class="new-file">
+
debian/patches/no_extratools_doc.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#9d6322013007f928e8d85f3a36e671e4cee0df8f">
debian/patches/use_debian_packaged_jars.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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<td class="new_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">chiropraxis/doc/tools-manual.*</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">king-manual.*</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">new-color-palette.*</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">format-kinemage.*</span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">rdcvis-manual.*</span></pre>
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<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,10 +8,17 @@ Build-Depends: debhelper-compat (= 13),</td>
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<td class="old_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> javahelper,</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> ant,</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="new_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> inkscape,</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> junit4,</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> libhamcrest-java,</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libitext-java,</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libjogl2-java,</span>
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<td class="old_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> libpdfbox2-java,</span>
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<td class="old_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="new_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> libfontbox-java</span>
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<td class="old_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> libpdfbox-graphics2d-java,</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> libfontbox-java,</span>
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<td class="old_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> lyx,</span>
</pre>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> perl,</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> texlive-fonts-recommended,</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> texlive-latex-base</span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Standards-Version: 4.6.0</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/king</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/king.git</span>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#700c026afa14d068427a069d9e1c510c601501b7"><strong>debian/king.doc-base.extratools</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Document: extratools</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Title: The Extratools manual</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Author: Ian W. Davis, Vincent B. Chen, and Daniel A. Keedy</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Abstract: The KiNG Tools</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> This manual describes the KiNG tools available in the ’extratools’ and</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> ’rdcvis’ packages. It is roughly laid out in order of the tools menu in</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> KiNG, with tools in the main menu in this chapter, and a separate</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> chapter for the ’Data analysis’, ’Kin editing’, ’Structural biology’,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> ’Export’ (File menu), and ’Specialty’ tools. Also see the KiNG manual</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> for descriptions of other tools.</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Format: pdf</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Files: /usr/share/doc/king/extratools-manual.pdf</span></pre>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#1d16ced22c6c807c5da4908d44201645c1123c1e"><strong>debian/king.doc-base.hacking-king</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Document: hacking-king</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Title: Hacking KiNG</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Author: Ian W. Davis</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Abstract: Hacking KiNG</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> This document is intended to provide a field guide to the code for KiNG</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> and its associated libraries, Driftwood and Chiropraxis. For more</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> information, please see the relevant Javadocs, and ultimately, the code</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> itself. In particular, most of the references for the various published</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> algorithms are somewhere in the Javadocs. Some parts of the code are</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> better commented than others, but it’s mostly pretty comprehensible. If</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> not, you can often use the incomprehensible parts without having to</span>
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<td class="old_line diff-line-num old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> understand how they work.</span>
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<td class="old_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> .</span>
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<td class="old_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> The first part of this discussion will provide an overview of all the</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> code, starting with driftwood, building chiropraxis on top of that, and</span>
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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> finally building king on top of them both. The second part will cover</span>
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<td class="old_line diff-line-num old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> the organizational principles behind the layout of code and resources,</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> compiling and building, maintaining documentation, and distributing</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> finished applications.</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Section: Science/Biology</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Format: pdf</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Files: /usr/share/doc/king/hacking-king.pdf</span></pre>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#30d325dd29368495bd6cdbd6fe640d9d8e67504a"><strong>debian/king.docs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">chiropraxis/doc/tools-manual.pdf</span>
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1
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">king/dist/king-*/doc/*.html</span>
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2
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">king/dist/king-*/doc/*.pdf</span>
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3
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">king/dist/king-*/doc/*.txt</span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">king/dist/king-*/README.html</span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">king/doc/work/king-manual.html</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">*.pdf</span></pre>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#a60e1c01e6635b3c33806ae96bb006a68b4b80d4"><strong>debian/king.jlibs</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">king/<span class="idiff left right">dist/king-*</span>/king.jar</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">king/<span class="idiff left right">plugins</span>/king.jar</span></pre>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#cd2e7a1503a7b87582178c3c73725e4d25ab4d8f"><strong>debian/makePdfDoc</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/perl</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">warnings</span><span class="p">;</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="perl"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Getting the changelog date at format mm/dd/yyyy.</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="perl"></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="perl"><span class="nb" style="color: #0086b3;">chomp</span><span class="p">(</span><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$dateChangelog</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">`</span><span class="sb" style="color: #d14;">date --utc --date="@</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="sb" style="color: #d14;">$(dpkg-parsechangelog -Stimestamp)" +%m/%d/%Y</span><span class="p">`);</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="perl"></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Temporary directory to host the .lyx directory.</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="perl"><span class="nb" style="color: #0086b3;">chomp</span><span class="p">(</span><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$tempDirLyx</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">`</span><span class="sb" style="color: #d14;">mktemp -d</span><span class="p">`);</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="perl"></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Inserting date in tools-manual.tex right after the title, copying at root.</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="perl"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">CHIRO</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;"><</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">chiropraxis/doc/work/tools-manual.tex</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open chiropraxis/doc/work/tools-manual.lyx for reading: $!</span><span class="p">";</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="perl"></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">OUTCHIRO</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">chiropraxis/doc/tools-manual.tex</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open chiropraxis/doc/tools-manual.tex for writing: $!</span><span class="p">";</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="perl"></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">join</span> <span class="p">'',</span> <span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: #008080;">CHIRO</span><span class="o" style="font-weight: 600;">></span><span class="p">;</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/(\\title.*?$)/$1\n\\date\{$dateChangelog\}\n/m</span><span class="p">;</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="perl"></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTCHIRO</span> <span class="nv" style="color: #008080;">$lignes</span><span class="p">;</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="perl"></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">CHIRO</span><span class="p">;</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">OUTCHIRO</span><span class="p">;</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="perl"></span>
</pre>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Inserting date in king-manual.lyx right after the title, copying at root.</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="perl"></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">KING</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;"><</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">king/doc/work/king-manual.lyx</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open king/doc/work/king-manual.lyx for reading: $!</span><span class="p">";</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="perl"></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">OUTKING</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">king-manual.lyx</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open king-manual.lyx for writing: $!</span><span class="p">";</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="perl"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">join</span> <span class="p">'',</span> <span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: #008080;">KING</span><span class="o" style="font-weight: 600;">></span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/(manual\n\\end_layout$)/$1\n\n\\begin_layout Date\n $dateChangelog\n\\end_layout/m</span><span class="p">;</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="perl"></span>
</pre>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTKING</span> <span class="nv" style="color: #008080;">$lignes</span><span class="p">;</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="perl"></span>
</pre>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">KING</span><span class="p">;</span></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">OUTKING</span><span class="p">;</span></span>
</pre>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Inserting date in format-kinemage.lyx right after the title, copying at root.</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="perl"></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">FORMAT</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;"><</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">king/doc/work/format-kinemage.lyx</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open king/doc/work/format-kinemage.lyx for reading: $!</span><span class="p">";</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="perl"></span>
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<td class="new_line diff-line-num new" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">OUTFORMAT</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">format-kinemage.lyx</span><span class="p">"</span></span>
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<td class="new_line diff-line-num new" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open format-kinemage.lyx for writing: $!</span><span class="p">";</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="perl"></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">join</span> <span class="p">'',</span> <span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: #008080;">FORMAT</span><span class="o" style="font-weight: 600;">></span><span class="p">;</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/(Kinemage File.*?\n\\end_layout$)/$1\n\n\\begin_layout Date\n $dateChangelog\n\\end_layout/m</span><span class="p">;</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="perl"></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTFORMAT</span> <span class="nv" style="color: #008080;">$lignes</span><span class="p">;</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="perl"></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">FORMAT</span><span class="p">;</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">OUTFORMAT</span><span class="p">;</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="perl"></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Inserting date in new-color-palette.lyx right before the title, copying at root.</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="perl"></span>
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<td class="new_line diff-line-num new" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">PALETTE</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;"><</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">king/doc/work/new-color-palette.lyx</span><span class="p">"</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open king/doc/work/new-color-palette.lyx for reading: $!</span><span class="p">";</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="perl"></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">OUTPALETTE</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">new-color-palette.lyx</span><span class="p">"</span></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
67
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC67" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open new-color-palette.lyx for writing: $!</span><span class="p">";</span></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="perl"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">join</span> <span class="p">'',</span> <span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: #008080;">PALETTE</span><span class="o" style="font-weight: 600;">></span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/(\\layout Title$)/\\begin_layout Date\n $dateChangelog\n\\end_layout\n\n$1/m</span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="perl"></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTPALETTE</span> <span class="nv" style="color: #008080;">$lignes</span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="perl"></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">PALETTE</span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">OUTPALETTE</span><span class="p">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="perl"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="perl"></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Inserting date in rdcvis-manual.lyx right before the title, copying at root.</span></span>
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<td class="new_line diff-line-num new" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="perl"></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">RDCVIS</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;"><</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">rdcvis/doc/work/rdcvis-manual.lyx</span><span class="p">"</span></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open rdcvis/doc/work/rdcvis-manual.lyx for reading: $!</span><span class="p">";</span></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="perl"></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="perl"><span class="nb" style="color: #0086b3;">open</span> <span class="nv" style="color: #008080;">OUTRDCVIS</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">></span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">rdcvis-manual.lyx</span><span class="p">"</span></span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="perl"> <span class="ow" style="font-weight: 600;">or</span> <span class="nb" style="color: #0086b3;">die</span> <span class="p">"</span><span class="s2" style="color: #d14;">Cannot open rdcvis-manual.lyx for writing: $!</span><span class="p">";</span></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="perl"></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">join</span> <span class="p">'',</span> <span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: #008080;">RDCVIS</span><span class="o" style="font-weight: 600;">></span><span class="p">;</span></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC87" class="line" lang="perl"><span class="nv" style="color: #008080;">$lignes</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/(\\begin_layout Title.*?$)/\\begin_layout Date\n $dateChangelog\n\\end_layout\n\n$1/m</span><span class="p">;</span></span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="perl"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="nv" style="color: #008080;">OUTRDCVIS</span> <span class="nv" style="color: #008080;">$lignes</span><span class="p">;</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="perl"></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">RDCVIS</span><span class="p">;</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="perl"><span class="nb" style="color: #0086b3;">close</span> <span class="nv" style="color: #008080;">OUTRDCVIS</span><span class="p">;</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="perl"></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Compile with pdflatex (twice, for the labels) and export with lyx.</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="perl"><span class="nb" style="color: #0086b3;">chdir</span> <span class="p">"</span><span class="s2" style="color: #d14;">chiropraxis/doc/</span><span class="p">";</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdflatex</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">tools-manual.tex</span><span class="p">";</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdflatex</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">tools-manual.tex</span><span class="p">";</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="perl"><span class="nb" style="color: #0086b3;">chdir</span> <span class="p">"</span><span class="s2" style="color: #d14;">../../</span><span class="p">";</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">lyx</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">-userdir</span><span class="p">",</span> <span class="nv" style="color: #008080;">$tempDirLyx</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">--export</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdf2</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">king-manual.lyx</span><span class="p">";</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">lyx</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">-userdir</span><span class="p">",</span> <span class="nv" style="color: #008080;">$tempDirLyx</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">--export</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdf2</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">format-kinemage.lyx</span><span class="p">";</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">lyx</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">-userdir</span><span class="p">",</span> <span class="nv" style="color: #008080;">$tempDirLyx</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">--export</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdf2</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">new-color-palette.lyx</span><span class="p">";</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="perl"><span class="nb" style="color: #0086b3;">system</span> <span class="p">"</span><span class="s2" style="color: #d14;">lyx</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">-userdir</span><span class="p">",</span> <span class="nv" style="color: #008080;">$tempDirLyx</span><span class="p">,</span> <span class="p">"</span><span class="s2" style="color: #d14;">--export</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">pdf2</span><span class="p">",</span> <span class="p">"</span><span class="s2" style="color: #d14;">rdcvis-manual.lyx</span><span class="p">";</span></span></pre>
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<li id="f4aa46b97d63b9f31fc17c6f5a29fdad281eaabc">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#f4aa46b97d63b9f31fc17c6f5a29fdad281eaabc"><strong>debian/patches/ignore_appbundler.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Forwarded: not-needed</td>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/king/build.xml</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/king/build.xml</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -36<span class="idiff left">6</span>,10 +36<span class="idiff">6</span>,6 @@</span><span class="idiff right"> https://groups.google.com/g/jaamsim-user</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -36<span class="idiff left">2</span>,10 +36<span class="idiff right">2</span>,6 @@</span></span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> </exec></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </target></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> </span>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#e775f430952172d9650980f3dd3b544ca1179e00"><strong>debian/patches/ignore_rdcvis.jar.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Forwarded: not-needed</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/king/build.xml</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/king/build.xml</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -20<span class="idiff left">4</span>,7 +20<span class="idiff right">4</span>,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -20<span class="idiff left">0</span>,7 +20<span class="idiff right">0</span>,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> <target name="dist-exe" depends="init,build"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> <copy file="${javadev}/chiropraxis/chiropraxis.jar" todir="plugins/" preservelastmodified="true"/></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> <copy file="${javadev}/extratools/extratools.jar" todir="plugins/" preservelastmodified="true"/></span>
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<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#a8ffe3cef0aad045b7ed97f497d7a3e933c0dbb3"><strong>debian/patches/no_extratools_doc.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: skipping the installation of the manual of extratools, as we</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> cannot manage to build it from source; lyx --export pdf2 tools-manual.lyx is</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> not working.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Author: Pierre Gruet <pgt@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Forwarded: https://github.com/rlabduke/javadev/issues/1</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Last-Update: 2022-01-30</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">--- a/king/build.xml</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/king/build.xml</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -214,7 +214,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </copy></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> <!-- extra doc files from other top-level projects; some need to be renamed --></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> <copy file="../chiropraxis/doc/tools-manual.pdf" tofile="${dist}/${ant.project.name}-${version}/doc/chiropraxis-manual.pdf"/></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <copy file="../extratools/doc/tools-manual.pdf" tofile="${dist}/${ant.project.name}-${version}/doc/extratools-manual.pdf"/></span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </target></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> <!-- }}} --></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -240,7 +239,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </copy></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> <!-- extra doc files from other top-level projects; some need to be renamed --></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> <copy file="../chiropraxis/doc/tools-manual.pdf" tofile="${dist}/${ant.project.name}-${version}/doc/chiropraxis-manual.pdf"/></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <copy file="../extratools/doc/tools-manual.pdf" tofile="${dist}/${ant.project.name}-${version}/doc/extratools-manual.pdf"/></span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> </target></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> <target name="jpackage-win" depends="init,build,jpackage-base"></span></pre>
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<br>
</li>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,4 @@ java7-compat.patch</td>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">ignore_appbundler.patch</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">ignore_rdcvis.jar.patch</span>
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6
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">using_free_iconset.patch</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">no_extratools_doc.patch</span></pre>
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<li id="9d6322013007f928e8d85f3a36e671e4cee0df8f">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#9d6322013007f928e8d85f3a36e671e4cee0df8f"><strong>debian/patches/use_debian_packaged_jars.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,10 +21,11 @@ Forwarded: not-needed</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> <pathelement location="../driftwood/build"/></span>
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<td class="old_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="pdfbox.jar"/> <!-- Required for PDF export --></span></span>
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<td class="old_line diff-line-num" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="fontbox.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="pdfbox-graphics2d.jar"/></span></span>
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<td class="old_line diff-line-num new" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="commons-logging-1.2.jar"/></span></span>
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<td class="old_line diff-line-num" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/pdfbox2.jar"/> <!-- Required for PDF export --></span></span>
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25
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/fontbox.jar"/></span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> <pathelement location="pdfbox-graphics2d.jar"/></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="commons-logging-1.2.jar"/></span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/pdfbox-graphics2d.jar"/></span></span>
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28
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/commons-logging.jar"/></span></span>
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29
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> </classpath></span>
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30
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> </javac></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,6 +57,21 @@ Forwarded: not-needed</td>
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56
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57
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"> <copy todir="plugins/" preservelastmodified="true" flatten="true"></span>
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57
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58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/chiropraxis/build.xml</span></span>
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58
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59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/chiropraxis/build.xml</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="p">@@ -64,10 +64,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"> <classpath></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> <pathelement location="../driftwood/build"/></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> <pathelement location="../king/build"/></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="pdfbox.jar"/> <!-- Required for PDF export --></span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="fontbox.jar"/></span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="pdfbox-graphics2d.jar"/></span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="commons-logging-1.2.jar"/></span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/pdfbox2.jar"/> <!-- Required for PDF export --></span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/fontbox.jar"/></span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/pdfbox-graphics2d.jar"/></span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/commons-logging-1.2.jar"/></span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> <pathelement location="../molikin/build"/></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> </classpath></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"> </javac></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="diff"><span class="p">@@ -155,7 +155,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="diff"> <!-- Deploys the executable on the local MolProbity - applies to IWD's machine only --></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="diff"> <target name="deploy-local-mp" description="Deploy to local MolProbity" depends="build"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,3 +81,16 @@ Forwarded: not-needed</td>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="diff"> </target></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="diff"> <!-- }}} --></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="diff"> </project></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/extratools/build.xml</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/extratools/build.xml</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="p">@@ -55,8 +55,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"> <pathelement location="../driftwood/build"/></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"> <pathelement location="../chiropraxis/build"/></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"> <pathelement location="../king/build"/></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="../lib/junit/junit-4.13-beta-1.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <pathelement location="../lib/junit/hamcrest-core-1.3.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/junit4.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <pathelement location="/usr/share/java/hamcrest-core.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"> </classpath></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"> </javac></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"> </target></span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/king/-/compare/1670f84c2b5281d41ddb2742e1e30f0eb017f1bc...f164a6aff85875960a18697cb032882ecbf2369a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,8 @@ override_dh_auto_configure:</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv</span> <span class="k" style="font-weight: 600;">*</span>.png ../../king/resource/king/images/</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="make"><span class="nl">override_dh_auto_build</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># Build the pdf docs from lyx and tex files.</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="make"> debian/makePdfDoc</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># create backups of original buildnum resources to enable building twice in a row</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="k" style="font-weight: 600;">for </span>component <span class="k" style="font-weight: 600;">in </span>chiropraxis driftwood extratools king molikin <span class="p">;</span> <span class="k" style="font-weight: 600;">do</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-e</span> <span class="nv" style="color: #008080;">$$</span>component/resource/<span class="nv" style="color: #008080;">$$</span>component/buildnum.props <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span> <span class="se" style="color: #d14;">\</span></span>
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