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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1ce30024f84f2c36d4b401f3bd42c48ec44e0fa1">1ce30024</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-05T13:42:58+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1ce30024f84f2c36d4b401f3bd42c48ec44e0fa1#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 05 Feb 2022 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 05 Feb 2022 1<span class="idiff left">3</span>:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">86</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">0</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">90</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">3</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 53 | {practice,laboratory,covid-19,imaging,his,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> htsjdk | 34 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> amide | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | 25 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> orthanc-webviewer | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> orthanc-webviewer | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 14 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 12 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> lagan | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> mrtrix3 | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> dicomnifti | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> orthanc-dicomweb | 9 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> nifticlib | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> openslide | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> orthanc-postgresql | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> pixelmed | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> mia | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> orthanc-postgresql | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,7 +51,6 @@ Last-Update: Sat, 05 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> libsbml | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> melting | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> mhap | 4 | {bio-ngs,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -72,6 +71,7 @@ Last-Update: Sat, 05 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> clonalframeml | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> clonalorigin | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> embassy-domainatrix | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> embassy-domalign | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> embassy-domsearch | 3 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -80,6 +80,7 @@ Last-Update: Sat, 05 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> libbio-mage-utils-perl | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -103,7 +104,6 @@ Last-Update: Sat, 05 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> cat-bat | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> cmtk | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> dextractor | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> jmodeltest | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<td class="old_line diff-line-num" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -192,8 +192,8 @@ Last-Update: Sat, 05 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<td class="old_line diff-line-num" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<td class="old_line diff-line-num" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> shovill | 0 | {covid-19,bio} | </span>
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