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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/resfinder">Debian Med / resfinder</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/05cc2f878fd4eaba5ab31b0927310a6e23072342">05cc2f87</a></strong>
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<span>by Andreas Hasenack</span>
<i>at 2022-02-05T19:47:46+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix collections import under python 3.10+
Closes: #1005030
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<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/0c4d4daebe6e946ff677ec25722e6cdf46a9f54b">0c4d4dae</a></strong>
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<span>by Andreas Tille</span>
<i>at 2022-02-07T05:28:23+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'salsa-resfinder-py310-collections-import' into 'master'
Fix collections import under python 3.10+
See merge request med-team/resfinder!2</pre>
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<h4>2 changed files:</h4>
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<a href="#a6aed151ae9e3df181d13e1f1da8b75af3e4bb37">
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+
debian/patches/py310_collections_import.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="a6aed151ae9e3df181d13e1f1da8b75af3e4bb37">
<a href="https://salsa.debian.org/med-team/resfinder/-/compare/8c49258ea601d098038058853e28627a6ef51c1a...0c4d4daebe6e946ff677ec25722e6cdf46a9f54b#a6aed151ae9e3df181d13e1f1da8b75af3e4bb37"><strong>debian/patches/py310_collections_import.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: fix collections import under py3.10</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> In python 3.10[1] deprecated aliases to Collections Abstract Base Classes from</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> the collections module have been removed. These imports must be done from</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> collections.abc.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> 1. https://docs.python.org/3/whatsnew/3.10.html</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">Author: Andreas Hasenack <andreas@canonical.com></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">Bug: https://bitbucket.org/genomicepidemiology/resfinder/issues/70/</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/1005030</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/resfinder/+bug/1960146</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">Last-Update: 2022-02-05</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">diff --git a/cge/output/orderedset.py b/cge/output/orderedset.py</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index 99265d9..79cca32 100644</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/cge/output/orderedset.py</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cge/output/orderedset.py</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -17,7 +17,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> # SOFTWARE.</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> import collections</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-class OrderedSet(collections.MutableSet):</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+class OrderedSet(collections.abc.MutableSet):</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> def __init__(self, iterable=None):</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> self.end = end = []</span></pre>
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<a href="https://salsa.debian.org/med-team/resfinder/-/compare/8c49258ea601d098038058853e28627a6ef51c1a...0c4d4daebe6e946ff677ec25722e6cdf46a9f54b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fix_path_in_testscript.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix_syntax.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix-shebang.patch</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">py310_collections_import.patch</span></pre>
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