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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/b70aabd9dc785c499ce5185ee6598571edbaaa65">b70aabd9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T15:51:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.12.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/ba222b84e7052692fed9f379eb813e9eb32cefea">ba222b84</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T15:53:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.12.0+dfsg'
Update to upstream version '2.12.0+dfsg'
with Debian dir c41a84a6c48876063ede467f507984aaae6ae971</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/41db5d1505ef07be02a7f889d77d90c1a11501b3">41db5d15</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T15:58:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Polishing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/9f1d56df086288630903f91940d4e6983e3f955d">9f1d56df</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T16:20:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing superfluous file patterns in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/422c61c896c05f6e8f57e9da78cac88b07bd5a3b">422c61c8</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T16:24:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skipping more tests needing the network
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/21f9ce658069450e901ee1d9e684271786a29fe5">21f9ce65</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T16:24:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/ad68eff1f1d38364af31f64de33130cd3703a1d7">ad68eff1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T16:36:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/78173725c98b6f775386bd4847714a59ee4cb2ec">78173725</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T20:44:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Discarding other tests requiring network access
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/bcd610f2b91884515cde6d65d219c514744ca728">bcd610f2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-09T20:44:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
</a>
</li>
<li class="file-stats">
<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf">
debian/patches/jide_dependency.patch
</a>
</li>
<li class="file-stats">
<a href="#a39bfa0b675b5bfb2d9e49d7d4bb342996744780">
debian/patches/old_gradle_name.patch
</a>
</li>
<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
debian/patches/omit_aws_stuff.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
</a>
</li>
<li class="file-stats">
<a href="#be3a13aeb161c9f255cec474018169e8cab1f5b0">
debian/patches/using_home_made_icons.patch
</a>
</li>
<li class="file-stats">
<a href="#8fe47b4cf0a54cb6fd9ebc52c72790fc2ef4c9d2">
scripts/test_suite.args
</a>
</li>
<li class="file-stats">
<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">
src/main/java/module-info.java
</a>
</li>
<li class="file-stats">
<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39">
src/main/java/org/broad/igv/Globals.java
</a>
</li>
<li class="file-stats">
<a href="#12d31fb7e0f2c9bea57a463c570d25ea60dd402a">
src/main/java/org/broad/igv/batch/BatchRunner.java
</a>
</li>
<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045">
src/main/java/org/broad/igv/batch/CommandExecutor.java
</a>
</li>
<li class="file-stats">
<a href="#084e2c4ac995006a31a19d3aa090c2d082e1b692">
src/main/java/org/broad/igv/batch/CommandListener.java
</a>
</li>
<li class="file-stats">
<a href="#491f2b343da6312262d4f50dd17ea49dd4bc051b">
src/main/java/org/broad/igv/bbfile/BBFileReader.java
</a>
</li>
<li class="file-stats">
<a href="#47310dd6ffbcaf89dcd866d6c928747b71e54087">
src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
</a>
</li>
<li class="file-stats">
<a href="#7dff93f054de517c80b3e62a96cd8177dc7c4eb8">
src/main/java/org/broad/igv/bbfile/RPTree.java
</a>
</li>
<li class="file-stats">
<a href="#2d8cb49895a3bdf4b308d7aafec4642b12145c78">
src/main/java/org/broad/igv/bedpe/BedPEFeature.java
</a>
</li>
<li class="file-stats">
<a href="#bc374b5aaef462d04b59464f716435d1ab1f7431">
src/main/java/org/broad/igv/bedpe/BedPEParser.java
</a>
</li>
<li class="file-stats">
<a href="#80e2c3e508599acc80b8e7262202181f43bbd01b">
src/main/java/org/broad/igv/bedpe/InteractionTrack.java
</a>
</li>
<li class="file-stats">
<a href="#556a2cecb205f57258574ab2d3db7a38c21663be">
src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
</a>
</li>
<li class="file-stats">
<a href="#ff18e58c8dbada2da60a876d67153c9fc197d1c4">
src/main/java/org/broad/igv/data/CombinedDataSource.java
</a>
</li>
<li class="file-stats">
<a href="#325b4249429c53e7ad982f182c977f815318086a">
src/main/java/org/broad/igv/data/GenomeSummaryData.java
</a>
</li>
<li class="file-stats">
<a href="#029d37846a4d6800443a8b95c01c8bcd56212922">
src/main/java/org/broad/igv/data/IGVDatasetParser.java
</a>
</li>
<li class="file-stats">
<a href="#2ab8daa80f7247c285773a327db20ca7deda38a8">
src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java
</a>
</li>
<li class="file-stats">
<a href="#995a78fe9bd69c77436eea148f6766f7aa5812b0">
src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java
</a>
</li>
<li class="file-stats">
<a href="#4f797f39e7b66756c05766c5b5a14dbe364d9202">
src/main/java/org/broad/igv/data/seg/SegmentFileParser.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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