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<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/b70aabd9dc785c499ce5185ee6598571edbaaa65">b70aabd9</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2022-02-09T15:51:37+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.12.0+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<li class="file-stats">
<a href="#8fe47b4cf0a54cb6fd9ebc52c72790fc2ef4c9d2">
scripts/test_suite.args
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<li class="file-stats">
<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">
src/main/java/module-info.java
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<li class="file-stats">
<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39">
src/main/java/org/broad/igv/Globals.java
</a>
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<li class="file-stats">
<a href="#12d31fb7e0f2c9bea57a463c570d25ea60dd402a">
src/main/java/org/broad/igv/batch/BatchRunner.java
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<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045">
src/main/java/org/broad/igv/batch/CommandExecutor.java
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<li class="file-stats">
<a href="#084e2c4ac995006a31a19d3aa090c2d082e1b692">
src/main/java/org/broad/igv/batch/CommandListener.java
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<li class="file-stats">
<a href="#491f2b343da6312262d4f50dd17ea49dd4bc051b">
src/main/java/org/broad/igv/bbfile/BBFileReader.java
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<li class="file-stats">
<a href="#47310dd6ffbcaf89dcd866d6c928747b71e54087">
src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
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<li class="file-stats">
<a href="#7dff93f054de517c80b3e62a96cd8177dc7c4eb8">
src/main/java/org/broad/igv/bbfile/RPTree.java
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<li class="file-stats">
<a href="#2d8cb49895a3bdf4b308d7aafec4642b12145c78">
src/main/java/org/broad/igv/bedpe/BedPEFeature.java
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<li class="file-stats">
<a href="#bc374b5aaef462d04b59464f716435d1ab1f7431">
src/main/java/org/broad/igv/bedpe/BedPEParser.java
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<li class="file-stats">
<a href="#80e2c3e508599acc80b8e7262202181f43bbd01b">
src/main/java/org/broad/igv/bedpe/InteractionTrack.java
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<li class="file-stats">
<a href="#556a2cecb205f57258574ab2d3db7a38c21663be">
src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
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<li class="file-stats">
<a href="#ff18e58c8dbada2da60a876d67153c9fc197d1c4">
src/main/java/org/broad/igv/data/CombinedDataSource.java
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<li class="file-stats">
<a href="#325b4249429c53e7ad982f182c977f815318086a">
src/main/java/org/broad/igv/data/GenomeSummaryData.java
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<li class="file-stats">
<a href="#029d37846a4d6800443a8b95c01c8bcd56212922">
src/main/java/org/broad/igv/data/IGVDatasetParser.java
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<li class="file-stats">
<a href="#2ab8daa80f7247c285773a327db20ca7deda38a8">
src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java
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<li class="file-stats">
<a href="#995a78fe9bd69c77436eea148f6766f7aa5812b0">
src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java
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<li class="file-stats">
<a href="#4f797f39e7b66756c05766c5b5a14dbe364d9202">
src/main/java/org/broad/igv/data/seg/SegmentFileParser.java
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<li class="file-stats">
<a href="#9d656516a4b54ab30c8bc0edc0e2fd380664d7a8">
src/main/java/org/broad/igv/feature/AbstractCacher.java
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<li class="file-stats">
<a href="#e9196110bc3184aedf852063f44f30ccc58d368f">
src/main/java/org/broad/igv/feature/Mutation.java
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<li class="file-stats">
<a href="#72490733be19fc5bccfdfadee3848f177a0eddd8">
src/main/java/org/broad/igv/feature/genome/ChromosomeComparator.java
</a>
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<li class="file-stats">
<a href="#58e1ad1b32e35ec2f06bf31081f346e64ec97840">
src/main/java/org/broad/igv/feature/genome/Genome.java
</a>
</li>
<li class="file-stats">
<a href="#8e61660f1b90c14fd5e0edc481b91810023dd589">
src/main/java/org/broad/igv/feature/genome/GenomeManager.java
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<li class="file-stats">
<a href="#a8ef610ea1aa5d27170046f0ee1fc28c3401b18d">
src/main/java/org/broad/igv/feature/genome/fasta/FastaIndex.java
</a>
</li>
<li class="file-stats">
<a href="#eb788968cb505371b78d1a51cfd2b0304b9f7bc7">
src/main/java/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
</a>
</li>
<li class="file-stats">
<a href="#46e518dafb0d79f97c80a3fb634eccc757850386">
src/main/java/org/broad/igv/feature/genome/load/ChromSizesParser.java
</a>
</li>
<li class="file-stats">
<a href="#e09944e53ad81158a1164a9585a5f56abd2a4b22">
src/main/java/org/broad/igv/feature/genome/load/DotGenomeLoader.java
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</ul>
<h5>The diff was not included because it is too large.</h5>
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