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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dae3afa115d4a3d63d1694d50f9a4c5d333591df">dae3afa1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-10T13:43:01+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/dae3afa115d4a3d63d1694d50f9a4c5d333591df#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 10 Feb 2022 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 10 Feb 2022 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">4</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">5</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 54 | {practice,laboratory,covid-19,imaging,his,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> amide | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | <span class="idiff left right">19</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | <span class="idiff left right">20</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> orthanc-webviewer | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">6</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 14 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> nifticlib | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> lagan | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> mrtrix3 | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> dicomnifti | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> <span class="idiff left">orthanc-dicomweb</span> | 9 | {imaging<span class="idiff right">,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left">pixelmed </span> | 9 | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk </span> | 8 | {<span class="idiff right">bio-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">orthanc-dicomweb</span> | 8 | {<span class="idiff right">imaging,covid-19}</span> | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> orthanc-postgresql | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> <span class="idiff left">pixelmed</span> | <span class="idiff">8</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> <span class="idiff left">ngs-sdk </span> | <span class="idiff">7</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> jebl2 | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> mia | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> nifti2dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> nifticlib | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> plastimatch | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> king | 5 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> mia | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +69,6 @@ Last-Update: Thu, 10 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> clonalframeml | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> clonalorigin | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> dicompyler | 3 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> embassy-domainatrix | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> embassy-domalign | 3 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,7 +83,6 @@ Last-Update: Thu, 10 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> orthanc-gdcm | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> orthanc-python | 3 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> oscar | 3 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> proalign | 3 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,6 +105,7 @@ Last-Update: Thu, 10 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> pscan-chip | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> python-wdlparse | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -191,19 +191,18 @@ Last-Update: Thu, 10 Feb 2022 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> shovill | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> sight | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> snpeff | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> tipp | 0 | {bio,covid-19} | </span>
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> vienna-rna | 0 | {covid-19,bio} | </span>
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<td class="old_line diff-line-num" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
207
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> xxsds-dynamic | 0 | {bio-dev} | </span>
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208
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="plaintext">(23<span class="idiff left right">3</span> rows)</span>
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<td class="old_line diff-line-num new" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext">(23<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"></span></pre>
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