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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyml">Debian Med / phyml</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/d6a32a1cb6b9a48c48f7e10a53b3ab01acbb03a6">d6a32a1c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-22T23:29:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/37244647fba6f0f6fcada1b5079b9c782349e898">37244647</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-22T23:29:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.20211118</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/c9a2b01394edfe987a738bea65ffc967291c0085">c9a2b013</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-22T23:30:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.3.20211118'
Update to upstream version '3.3.20211118'
with Debian dir 9bc8479261021f172d71325f3f167e59b322d78b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/8a2cba64516532444eb3eba5f12175b58b1c18bb">8a2cba64</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:01:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete nodup-am-init-automake.patch: applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/a2397ccd4233244968a1b721f5ef8d7835b92569">a2397ccd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:03:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh no-configure-ac-date.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/583ca2a3e529bd6b3affaea26f143c63ef4dbc7e">583ca2a3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:04:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh no-march-native.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/fbe3be1dc89348b96afed638ee5fde4f3c949cac">fbe3be1d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:05:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh apply-cflags.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/0165b30b61adbb22683a4b155052077e224f22cb">0165b30b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:05:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh apply-ldflags.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/3b8389b0e69e057e908aeb4375f2faec28513d78">3b8389b0</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:05:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh cross.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/9d3b31fa3a59e4f466c35d15926483bbaff22e14">9d3b31fa</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:05:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh filter-sse3-intrinsics.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/0c590010a2b75e5a57c88089ee2cdeaf99539937">0c590010</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:06:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh fix_declaration_of_temp.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/95a62ace9f2ae61db241edf2bcb46f423fe259c5">95a62ace</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:11:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/831cd2d2b7027c80b04f9231edb27eb3383c910d">831cd2d2</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:16:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/apply-ldflags.patch: file DEP3 header
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/bcced33b107ff0c963eea34b1ba81364ec71d81b">bcced33b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:51:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add typos.patch, fixing various typos caught by lintian
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/9efc87c3224b9006177909303613b5511d609d51">9efc87c3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-11-23T00:54:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/phyml.1: fix typo in manual page caught by lintian
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/55932608de89ccef431f9d5e2bd5adf20c8822c6">55932608</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:39:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.20211231</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/2c856a518b91d7ffcc4a85b2abe5c69e380ef4aa">2c856a51</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:39:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/c558aaa389a477f2e5e7e014623d4a37d4a7f1a0">c558aaa3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:39:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.3.20211231'
Update to upstream version '3.3.20211231'
with Debian dir fe260589ead8e17386c8f4dd96fd83bee15de08c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/bb6fa889d603d6f6391bb48b75598227ebccf4bc">bb6fa889</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:39:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove duplicate line from changelog.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/351dafbfb0f118a202277ce4a4f6cff10bcf151e">351dafbf</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:41:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh sse_only_if_supported.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/63f6486e062743c86e5e1ca8c4c655d62325ccad">63f6486e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:44:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete no-stdc++.patch: patched code section disappeared
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/1d0367193728493644ea52a6dca8ac85a2468106">1d036719</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:47:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh no-configure-ac-date.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/a3c1a37d6069bfb285f40daa5721d8a7c43d6a4f">a3c1a37d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:48:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh fix_wrong_initialisation_of_array.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/34d7e1a4b0d38be7afb73ac34bc50887fa2bbf37">34d7e1a4</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:48:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh cross.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/18f415028845ef9328e2887850ca76e683f79e15">18f41502</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:49:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh filter-sse3-intrinsics.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/833fdc7c855024aefd8ef0aac2f3fbc8f521c25f">833fdc7c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:49:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh typos.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/501c097d0a44b7429e723bf33b6c21b0fd4ecd72">501c097d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T15:52:41+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/c2e3457fdc870b83e8591a5830a046fd567106b1">c2e3457f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T16:05:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">typos.patch: fix new typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/72641e4a2488d32b50dbd8ccf539fd0cf9ac89d4">72641e4a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T16:06:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: update copyright year
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/8348e2a5aebca32916a68e0846ec88a8aa27705c">8348e2a5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T16:37:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: mention doc/naturemag.bst
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyml/-/commit/6bd0dc775f47c79d4533984564c03767ab7db94a">6bd0dc77</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-02-11T16:42:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#ab0df1e4f4eac054b3fb98c728a2d1baa734a597">
debian/patches/apply-cflags.patch
</a>
</li>
<li class="file-stats">
<a href="#4149afba33d9c67a830ca0e4115181a0271f4fc3">
debian/patches/apply-ldflags.patch
</a>
</li>
<li class="file-stats">
<a href="#0d8181cd8c9dbe68093a8faf79725cbbd10e3e73">
debian/patches/cross.patch
</a>
</li>
<li class="file-stats">
<a href="#f440d121a1e50460d9dd2fa5b3022d8246cca3ee">
debian/patches/filter-sse3-intrinsics.patch
</a>
</li>
<li class="file-stats">
<a href="#6f3a0e7c3e302714921e20148750add5ef227469">
debian/patches/fix_declaration_of_temp.patch
</a>
</li>
<li class="file-stats">
<a href="#0ad239590caf1f32229185c32cf814afd342d082">
debian/patches/fix_wrong_initialisation_of_array.patch
</a>
</li>
<li class="file-stats">
<a href="#e3a9dc24be73b1344c7407143138db68421c2439">
debian/patches/no-configure-ac-date.patch
</a>
</li>
<li class="file-stats">
<a href="#0377f9dac78f4d5990bc676c9acc7f531d3c209c">
debian/patches/no-march-native.patch
</a>
</li>
<li class="file-stats">
<a href="#28e4b29d16a6f6efc4999b845ced775eed3cb698">
<span class="deleted-file">
−
debian/patches/no-stdc++.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#3e60a2a03aca48ba560a681578e0d93992967539">
<span class="deleted-file">
−
debian/patches/nodup-am-init-automake.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#acecfa794df004cba7e8002f550ed635606108ad">
debian/patches/sse_only_if_supported.patch
</a>
</li>
<li class="file-stats">
<a href="#e0ece4a919b15a75c23178e379a8ca9c0870bb37">
<span class="new-file">
+
debian/patches/typos.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#cebf25e5a3240ad6ad4b0d3bdaec97db6cb77902">
debian/phyml.1
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#29589b9dde4fef76aac8e8d8b076784d3244d944">
src/alrt.c
</a>
</li>
<li class="file-stats">
<a href="#cb22014a290932608bec34e7eae1dd29aac5a846">
src/date.c
</a>
</li>
<li class="file-stats">
<a href="#da4264899259740f7254bb9f5b5e8426d5ed79cb">
src/free.c
</a>
</li>
<li class="file-stats">
<a href="#bdb9151cbb30f67e0d165e523d19db30e3146ada">
src/free.h
</a>
</li>
<li class="file-stats">
<a href="#433f644a73d0422079a0a1decf6a89581132b081">
src/init.c
</a>
</li>
<li class="file-stats">
<a href="#0f3044ba93433ecc1c927c85984cb8dc55b76b9f">
src/io.c
</a>
</li>
<li class="file-stats">
<a href="#b400ea2912a521c894001fbd576bba94eb793438">
src/lk.c
</a>
</li>
<li class="file-stats">
<a href="#3a576e09615c0e19842e5f3ac31e858c9ae7fe41">
src/main.c
</a>
</li>
<li class="file-stats">
<a href="#970ce0cf28ec6b9b27aeb3b6acbed343626e5cf2">
src/make.c
</a>
</li>
<li class="file-stats">
<a href="#f572146f3ca0da2730c9b94757227186c006291f">
src/mcmc.c
</a>
</li>
<li class="file-stats">
<a href="#1536fa120420b7c3d71787173aff9329f3204601">
src/mixt.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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