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<h3>
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/0918694289e240fa642f6fb59d6a889bf864261e">09186942</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2022-02-11T13:57:18+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.809+ds</pre>
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<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
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<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
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<li class="file-stats">
<a href="#8f69f22aa697cdc13a2823f8e4fb1051e26b6e40">
src/libmaus2/aio/ArrayFile.hpp
</a>
</li>
<li class="file-stats">
<a href="#5c9d7f9fe3cc35a6dcee6a13b61f1d3b8aa80fed">
src/libmaus2/aio/ArrayInputStreamBuffer.hpp
</a>
</li>
<li class="file-stats">
<a href="#3c6d25460ad86ca0cba8d283d55e1a0b63c113d2">
src/libmaus2/aio/MemoryOutputStreamFactory.hpp
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<li class="file-stats">
<a href="#ab55d88656f9c827ee6dd04003eeeaea6486519c">
src/libmaus2/aio/OFStreamOutputStreamFactory.hpp
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<li class="file-stats">
<a href="#2bd3d4ed8c8f922fe0f03ecb2a73753b0789891c">
src/libmaus2/aio/OutputStreamFactory.hpp
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<li class="file-stats">
<a href="#968840aea65e37b6646383b2a96b8c13b1e29720">
src/libmaus2/aio/OutputStreamFactoryContainer.hpp
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<li class="file-stats">
<a href="#6676ded718b162f5132f6c234057abb591795bab">
src/libmaus2/aio/PosixFdOutputStreamFactory.hpp
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<li class="file-stats">
<a href="#dde05472484d3614c53017ce01e5979bc70f2c2a">
src/libmaus2/aio/SecrecyOutputStreamFactory.cpp
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<li class="file-stats">
<a href="#af1c1479f0b72bcba2027f93fc16031fbac3ae8e">
src/libmaus2/aio/SecrecyOutputStreamFactory.hpp
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<li class="file-stats">
<a href="#a0d45d2757b713a971aaf7f4cc83c3461ac6fbe0">
src/libmaus2/aio/SynchronousGenericInput.hpp
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<li class="file-stats">
<a href="#53241dc590560f97281aed59ba848ac358084786">
src/libmaus2/bambam/BamAlignment.cpp
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<li class="file-stats">
<a href="#26d7ebc55160864f1aa3eac745365cc7b389598f">
src/libmaus2/dazzler/db/DatabaseFile.hpp
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<li class="file-stats">
<a href="#02bcda92a2aa652c12325a67d7821f145799a7fb">
src/libmaus2/fastx/KmerCount.hpp
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<li class="file-stats">
<a href="#75e4647555042739fbba414db9ad40b40cff821b">
src/libmaus2/gamma/GammaGapEncoder.hpp
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<li class="file-stats">
<a href="#21baf7a30b2abc0073edcd20f26fe1db02554ada">
src/libmaus2/gamma/Interval.hpp
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<li class="file-stats">
<a href="#ae5b108d9af1e3a98b6f5847364f4b849a771f65">
src/libmaus2/gamma/SparseGammaGapConcatDecoder.hpp
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<li class="file-stats">
<a href="#af4a347319268365d6e77d1c011e3d427e6d5a29">
src/libmaus2/gtf/RangeSets.hpp
</a>
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<li class="file-stats">
<a href="#d599ad732b1834b824ff38934d25fc6eb27d2ac6">
src/libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp
</a>
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<li class="file-stats">
<a href="#af3964d48e67aea767f8c5ab036257df818398e4">
src/libmaus2/lcs/TwoSidedNPL.hpp
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<li class="file-stats">
<a href="#863e4d5d5c08b98d733a671a18488b2c8fccb648">
src/libmaus2/lz/StreamWrapperBuffer.hpp
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<li class="file-stats">
<a href="#40d858119e046bd72c8c22f3671fbe162ffb89ec">
src/libmaus2/parallel/threadpool/ThreadPool.hpp
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<li class="file-stats">
<a href="#20438cea19c5789927feb0e26cce3d954b5f5006">
src/libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp
</a>
</li>
<li class="file-stats">
<a href="#272f6e1fb691ef0d2b4b6aa700005389390f3656">
src/libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp
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<li class="file-stats">
<a href="#d192e5093e8d0459f634261953217093ef5f5327">
<span class="new-file">
+
src/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp
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</a>
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<li class="file-stats">
<a href="#352d678cf113c3aff1aeaf0b0115a20432864854">
src/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp
</a>
</li>
<li class="file-stats">
<a href="#0aeb8d247aa144b23a9e7bf65c8cd77cc1e4dd19">
src/libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp
</a>
</li>
<li class="file-stats">
<a href="#f0011ef762b20925b4aeb0328536cf70b09b5ab9">
src/libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp
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</ul>
<h5>The diff was not included because it is too large.</h5>
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