<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/969b221576b6e79a6752f537317d9da49eb13923">969b2215</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:12:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/fbfb65bde8511f436e389a578105c55224aecf46">fbfb65bd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:12:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/8b19f5db848da8f926c8e3d967c926c66f3a7759">8b19f5db</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:13:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert to old gubbins release to fix bug with iqtree2 compatibility
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/7de08d108c4ef08f9334009d2e82b3dacc91620e">7de08d10</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:15:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt to iqtree2
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/0a7fff804c53980a8b7c718f90308030494ef850">0a7fff80</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:17:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt port-to-pytest to old upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/b67b2ee4557630cd4a0557a5caebf74a2d37f59c">b67b2ee4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-13T15:20:39+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#fe77d5d1439f26e353a42bbd38dece2467ff6558">
<span class="deleted-file">
−
.github/workflows/build.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#df6ad12480a641d96d1a2554f6234ba058e37267">
<span class="new-file">
+
debian/patches/gubbins_3.1.0_exe_in_usr_lib.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a2470b33ad88916745979351435ccba0d2f1100">
debian/patches/gubbins_exe_in_usr_lib.patch
</a>
</li>
<li class="file-stats">
<a href="#15ccbf0b31b48daaa7c2f3dd64a91bcb9322dc4c">
<span class="new-file">
+
debian/patches/iqtree2.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#6daa2f08a5868e96950e63805c4e806b764e6534">
debian/patches/port-to-pytest.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#112a0772ac215bf87f8257be66adb66e6c8389b0">
<span class="new-file">
+
debian/patches/spelling-error-in-binary.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
<span class="deleted-file">
−
environment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
install_dependencies.sh
</a>
</li>
<li class="file-stats">
<a href="#2be6fe092a42753d652cbb209e2d5f96d7c5e1ef">
<span class="new-file">
+
obsolete_changelog
</span>
</a>
</li>
<li class="file-stats">
<a href="#e804e65e8c71d9829b02b843269b57e57ecb1bf5">
python/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#51300daad658670c4ce1468f53cc4c0aa201b508">
<span class="deleted-file">
−
python/VERSION
</span>
</a>
</li>
<li class="file-stats">
<a href="#0e20753a4c88045119953fc070aa994389074a00">
python/gubbins/ValidateFastaAlignment.py
</a>
</li>
<li class="file-stats">
<a href="#dbd8f55f9d2d447a9e6ecbc6ede7137b37f70b3b">
python/gubbins/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#aaaba74cad9a3f815206ba8bf91e26f24eb5a22a">
python/gubbins/common.py
</a>
</li>
<li class="file-stats">
<a href="#7fda0caa14793966c396bc00135eaa6633fb5b4f">
<span class="deleted-file">
−
python/gubbins/pyjar.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#d647c87bee00bdb39a6f51342867cc4d0f2c460d">
<span class="deleted-file">
−
python/gubbins/run_gubbins.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#833e9bff29e6ff7be1a7cba0459eff20f1a5b564">
<span class="deleted-file">
−
python/gubbins/tests/data/bootstrapping_test.aln
</span>
</a>
</li>
<li class="file-stats">
<a href="#55dba4aeb3f8b32d23fad72fb6d515ecf3294f8e">
python/gubbins/tests/data/non_bi_tree.tre.expected
</a>
</li>
<li class="file-stats">
<a href="#5a693a4491114cf09a2e4ced22097be73a75878c">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_expected
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4
</a>
</li>
<li class="file-stats">
<a href="#713c881e2f0e5669e3a30e740113b421aaa02324">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2_expected
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2
</a>
</li>
<li class="file-stats">
<a href="#c1392f68b247454df74edf7fbcbaf985d16aca46">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_tree_at_midpoint_expected
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/gubbins/-/compare/47586c783ae4f2d13930b857f9ad7d009ef9c76b...b67b2ee4557630cd4a0557a5caebf74a2d37f59c">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>