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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/sortmerna">Debian Med / sortmerna</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sortmerna/-/commit/3c15455ffc35c45f34f92aa1413b143b292f876f">3c15455f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-15T19:47:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use tags in watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sortmerna/-/commit/c7be78652a2eaa813cb716345bda4f7be029a3ae">c7be7865</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-15T19:48:38+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">For the moment there is no autopkgtest
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/sortmerna/-/commit/b1a5c061775170e64990d07b3a554ce6c9fff291">b1a5c061</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-15T19:51:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Warn users about missing binary indexdb_rna in NEWS.Debian
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/sortmerna/-/commit/74da441ae7702fc3bc0dace355b9155aafd71559">74da441a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-15T19:53:22+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/sortmerna/-/commit/fcea006de3cd6a9edeae8aa4dcacf7183add5e70">fcea006d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-16T12:14:17+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Somehow the last upload did not arrived in experimental
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<h4>4 changed files:</h4>
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<a href="#b3f55b8d9783f2ed27acfd1f0fe06dfc461e2aba">
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+
debian/NEWS
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<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
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−
debian/README.test
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<h4>Changes:</h4>
<li id="b3f55b8d9783f2ed27acfd1f0fe06dfc461e2aba">
<a href="https://salsa.debian.org/med-team/sortmerna/-/compare/b7de51cb13589e39e6212d2d37c8f5c3f435d736...fcea006de3cd6a9edeae8aa4dcacf7183add5e70#b3f55b8d9783f2ed27acfd1f0fe06dfc461e2aba"><strong>debian/NEWS</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">sortmerna (4.3.4-1) experimental; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Version 2.5 and below were featuring the binary indexdb_rna.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> This does not exist in version 4.x any more. Please adapt</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> your scripts accordingly.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 02 Feb 2022 11:22:30 +0100</span></pre>
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<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/sortmerna/-/compare/b7de51cb13589e39e6212d2d37c8f5c3f435d736...fcea006de3cd6a9edeae8aa4dcacf7183add5e70#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Notes</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">how</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span><span class="mf" style="color: #099;">.</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">This</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">running</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">provided</span> <span class="n" style="color: #333;">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="php"> <span class="n" style="color: #333;">sh</span> <span class="n" style="color: #333;">run</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">unit</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">test</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">in</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">to</span> <span class="n" style="color: #333;">confirm</span> <span class="n" style="color: #333;">its</span> <span class="n" style="color: #333;">integrity</span><span class="mf" style="color: #099;">.</span></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sortmerna/-/compare/b7de51cb13589e39e6212d2d37c8f5c3f435d736...fcea006de3cd6a9edeae8aa4dcacf7183add5e70#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,8 +16,10 @@ sortmerna (4.3.4-1) experimental; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Review copyright</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Deactivate autopkgtest which is based on binary indexdb_rna</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> which is not available any more</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Use tags in watch file</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Warn users about missing binary indexdb_rna in NEWS.Debian</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Wed, 02</span> Feb 2022 1<span class="idiff right">1:22:3</span>0 +0100</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Tue, 15</span> Feb 2022 1<span class="idiff right">9:51:1</span>0 +0100</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">sortmerna (2.1-5) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/sortmerna/-/compare/b7de51cb13589e39e6212d2d37c8f5c3f435d736...fcea006de3cd6a9edeae8aa4dcacf7183add5e70#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"># The file naming is inconsistent, so you'll need to look here manually:</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"># http://bioinfo.lifl.fr/RNA/sortmerna/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%sortmerna-$1.tar.gz%" \</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> https://github.com/biocore/sortmerna/releases \</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> (?:.*?/)?v?(\d[\d.]*)\.tar\.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> https://github.com/biocore/sortmerna/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz</span></pre>
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