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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pyfaidx">Debian Med / python-pyfaidx</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pyfaidx/-/commit/5b5a658290076ceacddb88166d3334bc2af6fc8a">5b5a6582</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-02-17T22:51:39+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add Recommends on python3-biopython
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pyfaidx/-/commit/101b321f41c372a621c7b369a728fa46fc3e1070">101b321f</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2022-02-17T23:03:49+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update/fix autopkgtest
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pyfaidx/-/commit/9c6f29e2c45b87a55bc8a368e1decf57e2805144">9c6f29e2</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-02-17T23:03:49+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">python-pyfaidx (0.6.4-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-pyfaidx (0.6.4-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * New upstream version</span>
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<td class="new_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Apply multi-arch hints.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +11,16 @@ python-pyfaidx (0.6.4-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> Remove python3-nose from Build-Depends</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Simplify build time test</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 17 Feb 2022 15:12:33 +0100</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Add patch to fix FTBFS</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * Add B-D on python3-biopython</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Revert "Update patches"</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * Properly re-diff locale patch</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Add Depends on python3-biopython</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Add Depends on python3-biopython</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Update/fix autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Thu, 17 Feb 2022 22:40:38 +0530</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">python-pyfaidx (0.6.2-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +26,8 @@ Rules-Requires-Root: no</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Package: python3-pyfaidx</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> ${python3:Depends}</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Recommends: python3-biopython</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Description: efficient random access to fasta subsequences for Python 3</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> Samtools provides a function "faidx" (FAsta InDeX), which creates a</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> small flat index file ".fai" allowing for fast random access to any</span>
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<a href="https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Depends: @, python3-<span class="idiff left right">nose</span>, python3-numpy</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @, python3-<span class="idiff left">pytest</span>, python3-numpy<span class="idiff right">, python3-biopython, tabix</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell">bgzip <span class="nt" style="color: #000080;">-c</span> tests/data/genes.fasta <span class="o" style="font-weight: 600;">></span> tests/data/genes.fasta.gz</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>py <span class="k" style="font-weight: 600;">in</span> <span class="si" style="color: #d14;">$(</span>py3versions <span class="nt" style="color: #000080;">-r</span> 2> /dev/null<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">do </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Testing with </span><span class="nv" style="color: #008080;">$py</span><span class="s2" style="color: #d14;"> in </span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">pwd</span><span class="si" style="color: #d14;">)</span><span class="s2" style="color: #d14;">:"</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"> <span class="idiff left">nose</span>test<span class="idiff right">s3</span> <span class="nt" style="color: #000080;">-v</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"> <span class="nv" style="color: #008080;"><span class="idiff left">$py</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">-m</span></span><span class="idiff right"> py</span>test <span class="nt" style="color: #000080;">-v</span></span>
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6
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span></pre>
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