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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/cf277464ee949fe563ca814a827b2387be02dbd1">cf277464</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:38:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/98442b81fedddf43fd8e3c7beae7e211ed55ad3a">98442b81</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:38:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/bada3ffad358d0d7220adcffbc84045d3441bdad">bada3ffa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:39:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.4.5'
Update to upstream version '2.4.5'
with Debian dir b558c595fb4d1a9d3fe70e3ae0aa5b3a3eede81c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/59a0758a2064801baf475887ca02d454a96f4a1a">59a0758a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:39:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop transition for old debug package migration.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/7b3da54f10af65627266aa22e72e4c6e63aa0bad">7b3da54f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:46:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/183889d7a5930c34bca7795cb472232581c5f11e">183889d7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-17T16:58:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7e43d6808132163da1c92d84bb5c6a900737fe4b">
.github/workflows/bowtie2.yml
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<li class="file-stats">
<a href="#dea7d9d2c0ed0c505374f9f90877bedd8f077710">
BOWTIE2_VERSION
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<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
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</li>
<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#a177c5447e9cdcbfd7d1dc1c7140293d0cfbc779">
aligner_seed.cpp
</a>
</li>
<li class="file-stats">
<a href="#c9b466ab26199558112972a17a75b8c21ac85c19">
aligner_seed.h
</a>
</li>
<li class="file-stats">
<a href="#057e0784d807c7b84958635ddeeb5003f2751ece">
aln_sink.cpp
</a>
</li>
<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
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</li>
<li class="file-stats">
<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
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</li>
<li class="file-stats">
<a href="#999fd61d6ccb4c3bc242370d11e9095438b9e1d1">
bt2_build.cpp
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</li>
<li class="file-stats">
<a href="#d1904db8401bf0137951f60c3d4a34a7cf8e2e84">
bt2_idx.h
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</li>
<li class="file-stats">
<a href="#8900eca5df34d74c6e0548d5c00714f6e70c5a77">
bt2_inspect.cpp
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</li>
<li class="file-stats">
<a href="#64f1aac6be9dd64453121ce3592c43407e567ded">
bt2_io.cpp
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#8349e79c83e3dffc4d4ae366712ef4e351aebe80">
debian/patches/correct_64bit_test
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</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#41edb87d75827ea69fc4be16c1d2830db9a0eb81">
debian/patches/no_sanity
</a>
</li>
<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
</a>
</li>
<li class="file-stats">
<a href="#6815d1260ed0fdc6f0d97bc028700b124f2bf358">
debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
</a>
</li>
<li class="file-stats">
<a href="#64628a335264e9862b9b687ae70cddf5e153ea9b">
debian/patches/use-source-date-epoch-in-Makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#9f15b0fe50d277c8d231ce47c6a42a8355f51ff0">
diff_sample.h
</a>
</li>
<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
</a>
</li>
<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
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</li>
<li class="file-stats">
<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
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</li>
<li class="file-stats">
<a href="#59bf596910fb7006481a4d8a45de81ff2bd75a4d">
doc/website/rhsidebar.ssi
</a>
</li>
<li class="file-stats">
<a href="#7c4ae52e4a13c990d16c9530fb874ed79064a5cd">
pat.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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