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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/plink2">Debian Med / plink2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink2/-/commit/3d93c55f45ed39d3162c8ac9b4cfaec43341d221">3d93c55f</a></strong>
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<span>by Andreas Tille</span>
<i>at 2022-02-18T20:42:45+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More debugging stuff
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9f6565350ed5343bbe8ea4c24db85f041da92b7d">
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+
debian/patches/debug3.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9f6565350ed5343bbe8ea4c24db85f041da92b7d">
<a href="https://salsa.debian.org/med-team/plink2/-/commit/3d93c55f45ed39d3162c8ac9b4cfaec43341d221#9f6565350ed5343bbe8ea4c24db85f041da92b7d"><strong>debian/patches/debug3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From ca19133b358b7a4a4083f50df15ba278152749dd Mon Sep 17 00:00:00 2001</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">From: Christopher Chang <chrchang523@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Date: Fri, 18 Feb 2022 08:31:30 -0800</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Subject: [PATCH] more Debian debug-prints</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Origin: https://github.com/chrchang/plink-ng/commit/ca19133b358b7a4a4083f50df15ba278152749dd.patch</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> 2.0/plink2.cc | 2 +-</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> 2.0/plink2_common.h | 4 ++++</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> 2.0/plink2_psam.cc | 1 +</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> 3 files changed, 6 insertions(+), 1 deletion(-)</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff">--- a/plink2_common.h</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/plink2_common.h</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -1015,6 +1015,10 @@</span> typedef struct PhenoColStruct {</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> PhenoDtype type_code;</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> uint32_t nonnull_category_ct;</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#ifdef __LP64__</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ // This may be needed to avoid segfaults on some machines?</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ uint32_t padding;</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> } PhenoCol;</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> void InitPheno();</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/plink2_psam.cc</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/plink2_psam.cc</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="p">@@ -606,6 +606,7 @@</span> PglErr LoadPsam(const char* psamname, co</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> goto LoadPsam_ret_NOMEM;</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ DPrintf("sizeof(PhenoCol): %" PRIuPTR " pheno_cols: %lx\n", sizeof(PhenoCol), R_CAST(uintptr_t, pheno_cols));</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> for (uint32_t pheno_idx = 0; pheno_idx != pheno_ct; ++pheno_idx) {</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> // ensure cleanup works if initialization fails in the middle</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> if (g_debug_on) {</span></pre>
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<a href="https://salsa.debian.org/med-team/plink2/-/commit/3d93c55f45ed39d3162c8ac9b4cfaec43341d221#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ use_packaged_libdeflate.patch</td>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">baseline</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">debug.patch</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">debug2.patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">debug3.patch</span></pre>
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