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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/nf-core-artic">Debian Med / nf-core-artic</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/88c6568a0837f8845dc0431f5e588267b6409681">88c6568a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T10:59:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Package does not provide a Python3 module
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/3bdcb7ced9fb93d873773047b89c56d419f3b215">3bdcb7ce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T10:59:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable Salsa-CI
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/ba429ac530231e7a1ba3a6783f3d8fdd5e81fc2b">ba429ac5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T11:00:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Artic not provided in nf-core space any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/98ad53b2e5384a20c6e6bc775de0a31c0444aeb3">98ad53b2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T11:01:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/2bbcf590dcf5eb29e1c67ec61474b9ebc974ba8f">2bbcf590</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T11:01:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/4cff23cce435b0601aebdfd1ee95cb48bbba96aa">4cff23cc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T11:01:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nf-core-artic/-/commit/b3e2e3a4286d84d04da233a5ea5b3dbeed8a9950">b3e2e3a4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-18T11:01:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
debian/salsa-ci.yml.ex
→
debian/salsa-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/nf-core-artic/-/compare/5bb73f869f926e23fd08fea6585bf91ddcfcea21...b3e2e3a4286d84d04da233a5ea5b3dbeed8a9950#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,14 +7,14 @@ Build-Depends: debhelper-compat (= 13),</td>
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<td class="old_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<td class="old_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python3-setuptools,</span>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python3-all</span>
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<td class="old_line diff-line-num old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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<td class="old_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6</span>.0</span>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/nf-core/artic/</span>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/nf-core-artic</span>
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<td class="old_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/nf-core-artic.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-python</span>
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<td class="old_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Package: <span class="idiff left right">python3-</span>nf-core-artic</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Package: nf-core-artic</span>
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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Architecture: all</span>
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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Depends: ${python3:Depends}, ${misc:Depends}</span>
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<td class="old_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Suggests: python-nf-core-artic-doc</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,4 +27,3 @@ Description: nf-core ARTIC field bioinformatics viral genome pipeline</td>
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<td class="old_line diff-line-num" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> This package at the very moment is not much more than a technical exercise.</span>
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<td class="old_line diff-line-num" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> Upstream tagged it as "under development" - and that is what it is here,</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> too.</span></pre>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> </span></pre>
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<a href="https://salsa.debian.org/med-team/nf-core-artic/-/compare/5bb73f869f926e23fd08fea6585bf91ddcfcea21...b3e2e3a4286d84d04da233a5ea5b3dbeed8a9950#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,4 +19,3 @@ export PYBUILD_NAME=nf-core-artic</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"># dh_auto_build</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"># PYTHONPATH=. python3 -m sphinx -N -bhtml docs/ build/html # HTML generator</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"># PYTHONPATH=. python3 -m sphinx -N -bman docs/ build/man # Manpage generator</span></pre>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/nf-core-artic/-/compare/5bb73f869f926e23fd08fea6585bf91ddcfcea21...b3e2e3a4286d84d04da233a5ea5b3dbeed8a9950#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml.ex</strong>
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<strong>debian/salsa-ci.yml</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># For more information on what jobs are run see:</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># https://salsa.debian.org/salsa-ci-team/pipeline</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># To enable the jobs, go to your repository (at salsa.debian.org)</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># and click over Settings > CI/CD > Expand (in General pipelines).</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># In "Custom CI config path" write debian/salsa-ci.yml and click</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="elixir"><span class="c1" style="color: #998; font-style: italic;"># in "Save Changes". The CI tests will run after the next commit.</span></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<a href="https://salsa.debian.org/med-team/nf-core-artic/-/compare/5bb73f869f926e23fd08fea6585bf91ddcfcea21...b3e2e3a4286d84d04da233a5ea5b3dbeed8a9950#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts="mode=git,pretty=0.0+git%cd.%h" \</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> https://github.com/<span class="idiff left right">nf-core</span>/artic.git HEAD</span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/<span class="idiff left right">heuermh</span>/artic.git HEAD</span></pre>
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