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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/plink2">Debian Med / plink2</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/plink2/-/commit/16f76ff3c979f6cbac0c68b2937c6ff40f6d666f">16f76ff3</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2022-02-19T11:40:29+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.00~a3-220217+dfsg</pre>

</li>

</ul>

<h4>5 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#e828d66bb2fc597bda91bc643d9d9d5df9c3de2f">

plink2.cc

</a>

</li>

<li class="file-stats">

<a href="#5c0ac48ba397674ac28142efc3b29b7de442d076">

plink2_cmdline.cc

</a>

</li>

<li class="file-stats">

<a href="#4f7d6e6ad86d6d2bcf897c56a687683436e96b49">

plink2_matrix.cc

</a>

</li>

<li class="file-stats">

<a href="#77152f1b1412f42b6493e48b39abf3be847a626f">

plink2_merge.cc

</a>

</li>

<li class="file-stats">

<a href="#436d5ebb95c2149ac987678ddff33cffca2ea965">

plink2_psam.cc

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="e828d66bb2fc597bda91bc643d9d9d5df9c3de2f">

<a href="https://salsa.debian.org/med-team/plink2/-/commit/16f76ff3c979f6cbac0c68b2937c6ff40f6d666f#e828d66bb2fc597bda91bc643d9d9d5df9c3de2f"><strong>plink2.cc</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,7 +71,7 @@ static const char ver_str[] = "PLINK v2.00a3"</td>

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71

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71

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<pre style="margin: 0;"> <span id="LC71" class="line" lang="">#ifdef USE_MKL</span>

</pre>

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72

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72

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<pre style="margin: 0;"> <span id="LC72" class="line" lang="">  " Intel"</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

73

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<pre style="margin: 0;"> <span id="LC73" class="line" lang="">#endif</span>

</pre>

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<td class="old_line diff-line-num old" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

74

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<td class="new_line diff-line-num old" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC74" class="line" lang="">  " (<span class="idiff left right">29 Jan</span> 2022)";</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

74

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<pre style="margin: 0;">+<span id="LC74" class="line" lang="">  " (<span class="idiff left right">17 Feb</span> 2022)";</span>

</pre>

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75

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75

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<pre style="margin: 0;"> <span id="LC75" class="line" lang="">static const char ver_str2[] =</span>

</pre>

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76

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<pre style="margin: 0;"> <span id="LC76" class="line" lang="">  // include leading space if day < 10, so character length stays the same</span>

</pre>

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77

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<pre style="margin: 0;"> <span id="LC77" class="line" lang="">  ""</span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10944,7 +10944,13 @@ int main(int argc, char** argv) {</td>

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<td class="old_line diff-line-num" data-linenumber="10944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10944

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<td class="new_line diff-line-num" data-linenumber="10944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10944

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<pre style="margin: 0;"> <span id="LC10944" class="line" lang="">    reterr = kPglRetWriteFail;</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="10945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10945

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<td class="new_line diff-line-num" data-linenumber="10945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10945

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<pre style="margin: 0;"> <span id="LC10945" class="line" lang="">  }</span>

</pre>

</td>

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<td class="old_line diff-line-num" data-linenumber="10946" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10946

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<td class="new_line diff-line-num" data-linenumber="10946" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10946

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC10946" class="line" lang="">  if (bigstack_ua) {</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="10947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="10947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10947

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<pre style="margin: 0;">+<span id="LC10947" class="line" lang="">    if (g_debug_on) {</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="10947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="10948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10948

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<pre style="margin: 0;">+<span id="LC10948" class="line" lang="">      fputs("--debug: Trying to free bigstack_ua.\n", stdout);</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="10947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="10949" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10949

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<pre style="margin: 0;">+<span id="LC10949" class="line" lang="">    }</span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="10950" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10950

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<pre style="margin: 0;"> <span id="LC10950" class="line" lang="">    free(bigstack_ua);</span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="10951" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10951

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<pre style="margin: 0;"> <span id="LC10951" class="line" lang="">  }</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="10952" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC10952" class="line" lang="">  if (g_debug_on) {</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="10953" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC10953" class="line" lang="">    fputs("--debug: Exiting.\n", stdout);</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="10954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10954

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<pre style="margin: 0;">+<span id="LC10954" class="line" lang="">  }</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="10949" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10949

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<td class="new_line diff-line-num" data-linenumber="10955" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10955

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<pre style="margin: 0;"> <span id="LC10955" class="line" lang="">  return S_CAST(int32_t, reterr);</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="10950" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10950

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<td class="new_line diff-line-num" data-linenumber="10956" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10956

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<pre style="margin: 0;"> <span id="LC10956" class="line" lang="">}</span>

</pre>

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<li id="5c0ac48ba397674ac28142efc3b29b7de442d076">

<a href="https://salsa.debian.org/med-team/plink2/-/commit/16f76ff3c979f6cbac0c68b2937c6ff40f6d666f#5c0ac48ba397674ac28142efc3b29b7de442d076"><strong>plink2_cmdline.cc</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -526,9 +526,15 @@ BoolErr CleanupLogfile(uint32_t print_end_time) {</td>

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526

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526

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<pre style="margin: 0;"> <span id="LC526" class="line" lang="cpp">  <span class="p">}</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

527

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527

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<pre style="margin: 0;"> <span id="LC527" class="line" lang="cpp">  <span class="n" style="color: #333;">BoolErr</span> <span class="n" style="color: #333;">ret_boolerr</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

528

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<td class="new_line diff-line-num" data-linenumber="528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC528" class="line" lang="cpp">  <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">g_logfile</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

529

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<pre style="margin: 0;">+<span id="LC529" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">g_debug_on</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

530

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<pre style="margin: 0;">+<span id="LC530" class="line" lang="cpp">      <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"--debug: g_log_failed = %u.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">g_log_failed</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

531

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<pre style="margin: 0;">+<span id="LC531" class="line" lang="cpp">    <span class="p">}</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

529

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<td class="new_line diff-line-num" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

532

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<pre style="margin: 0;"> <span id="LC532" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">g_log_failed</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

530

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<td class="new_line diff-line-num" data-linenumber="533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

533

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<pre style="margin: 0;"> <span id="LC533" class="line" lang="cpp">      <span class="n" style="color: #333;">logputs_silent</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

531

</td>

<td class="new_line diff-line-num" data-linenumber="534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

534

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<pre style="margin: 0;"> <span id="LC534" class="line" lang="cpp">      <span class="n" style="color: #333;">logputs_silent</span><span class="p">(</span><span class="n" style="color: #333;">g_logbuf</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

535

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<pre style="margin: 0;">+<span id="LC535" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">g_debug_on</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

536

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<pre style="margin: 0;">+<span id="LC536" class="line" lang="cpp">        <span class="n" style="color: #333;">fputs</span><span class="p">(</span><span class="s" style="color: #d14;">"--debug: Trying to close log.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">stdout</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

537

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<pre style="margin: 0;">+<span id="LC537" class="line" lang="cpp">      <span class="p">}</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

532

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<td class="new_line diff-line-num" data-linenumber="538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC538" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span><span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">g_logfile</span><span class="p">)))</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

533

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<td class="new_line diff-line-num" data-linenumber="539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

539

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<pre style="margin: 0;"> <span id="LC539" class="line" lang="cpp">        <span class="n" style="color: #333;">fflush</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">);</span></span>

</pre>

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534

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540

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<pre style="margin: 0;"> <span id="LC540" class="line" lang="cpp">        <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Error: Failed to finish writing to log: %s.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3571,6 +3577,12 @@ PglErr CmdlineParsePhase1(const char* ver_str, const char* ver_str2, const char*</td>

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<td class="new_line diff-line-num" data-linenumber="3577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC3577" class="line" lang="cpp">  <span class="n" style="color: #333;">PglErr</span> <span class="n" style="color: #333;">reterr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">kPglRetSuccess</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="3572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3572

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<td class="new_line diff-line-num" data-linenumber="3578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3578

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<pre style="margin: 0;"> <span id="LC3578" class="line" lang="cpp">  <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="3573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3573

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<td class="new_line diff-line-num" data-linenumber="3579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3579

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<pre style="margin: 0;"> <span id="LC3579" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argc_ptr</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3580

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<pre style="margin: 0;">+<span id="LC3580" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="3581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3581

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<pre style="margin: 0;">+<span id="LC3581" class="line" lang="cpp">      <span class="n" style="color: #333;">fputs</span><span class="p">(</span><span class="n" style="color: #333;">ver_str</span><span class="p">,</span> <span class="n" style="color: #333;">stdout</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3582

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<pre style="margin: 0;">+<span id="LC3582" class="line" lang="cpp">      <span class="n" style="color: #333;">fputs</span><span class="p">(</span><span class="n" style="color: #333;">ver_str2</span><span class="p">,</span> <span class="n" style="color: #333;">stdout</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3583" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3583

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<pre style="margin: 0;">+<span id="LC3583" class="line" lang="cpp">      <span class="n" style="color: #333;">fputs</span><span class="p">(</span><span class="s" style="color: #d14;">"Error: This application must be invoked with positive argc.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">stderr</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3584" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC3584" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">CmdlineParsePhase1_ret_INVALID_CMDLINE</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3585

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<pre style="margin: 0;">+<span id="LC3585" class="line" lang="cpp">    <span class="p">}</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="3574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3574

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<td class="new_line diff-line-num" data-linenumber="3586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC3586" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">const</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">argvk</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">TO_CONSTCPCONSTP</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argv_ptr</span><span class="p">);</span></span>

</pre>

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3575

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<td class="new_line diff-line-num" data-linenumber="3587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3587

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<pre style="margin: 0;"> <span id="LC3587" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333;">subst_argv</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">nullptr</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="3576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3576

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<td class="new_line diff-line-num" data-linenumber="3588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC3588" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">first_arg_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,7 +234,7 @@ static inline double MultiplyBySgn(double aa, double bb) {</td>

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234

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<pre style="margin: 0;"> <span id="LC234" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">SvdcmpC</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">m</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">w</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC235" class="line" lang="cpp">  <span class="c1" style="color: #998; font-style: italic;">// C port of PLINK stats.cpp svdcmp().</span></span>

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<pre style="margin: 0;"> <span id="LC236" class="line" lang="cpp">  <span class="c1" style="color: #998; font-style: italic;">// Now thread-safe.</span></span>

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<pre style="margin: 0;">-<span id="LC237" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">rv1</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">w</span><span class="p">[(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span><span class="n" style="color: #333;"><span class="idiff left right">m</span></span><span class="p">]);</span></span>

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<td class="new_line diff-line-num new" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC237" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">rv1</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">w</span><span class="p">[</span><span class="n" style="color: #333;"><span class="idiff left">S_CAST</span></span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">m</span></span><span class="p">)]);</span></span>

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<pre style="margin: 0;"> <span id="LC238" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC239" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">flag</span><span class="p">;</span></span>

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<td class="new_line diff-line-num" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC240" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span>  <span class="c1" style="color: #998; font-style: italic;">// suppress compile warning</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -474,12 +474,12 @@ BoolErr InvertMatrix(int32_t dim, double* matrix, MatrixInvertBuf1* dbl_1d_buf,</td>

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<pre style="margin: 0;"> <span id="LC474" class="line" lang="cpp"><span class="n" style="color: #333;">BoolErr</span> <span class="n" style="color: #333;">InvertFmatrixFirstHalf</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">dim</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">stride</span><span class="p">,</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">matrix</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">half_inverted</span><span class="p">,</span> <span class="n" style="color: #333;">MatrixInvertBuf1</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dbl_1d_buf</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dbl_2d_buf</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;"> <span id="LC475" class="line" lang="cpp">  <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">read_row</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">matrix</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC476" class="line" lang="cpp">  <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">write_row</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">half_inverted</span><span class="p">;</span></span>

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<pre style="margin: 0;">-<span id="LC477" class="line" lang="cpp">  <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">row_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">row_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff left right">)</span></span><span class="n" style="color: #333;">dim</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">row_idx</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">-<span id="LC478" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">col_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">col_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff left right">)</span></span><span class="n" style="color: #333;">dim</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">col_idx</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">-<span id="LC479" class="line" lang="cpp">      <span class="n" style="color: #333;">write_row</span><span class="p">[</span><span class="n" style="color: #333;">col_idx</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p"><span class="idiff left right">)</span></span><span class="n" style="color: #333;">read_row</span><span class="p">[</span><span class="n" style="color: #333;">col_idx</span><span class="p">];</span></span>

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<pre style="margin: 0;">+<span id="LC477" class="line" lang="cpp">  <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">row_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">row_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;"><span class="idiff left">S_CAST</span></span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;">dim</span><span class="p"><span class="idiff right">)</span>;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">row_idx</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC478" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">col_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">col_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;"><span class="idiff left">S_CAST</span></span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;">dim</span><span class="p"><span class="idiff right">)</span>;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">col_idx</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC479" class="line" lang="cpp">      <span class="n" style="color: #333;">write_row</span><span class="p">[</span><span class="n" style="color: #333;">col_idx</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">S_CAST</span></span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;">read_row</span><span class="p">[</span><span class="n" style="color: #333;">col_idx</span><span class="p">]<span class="idiff right">)</span>;</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC480" class="line" lang="cpp">    <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC481" class="line" lang="cpp">    <span class="n" style="color: #333;">read_row</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">read_row</span><span class="p">[</span><span class="n" style="color: #333;">stride</span><span class="p">]);</span></span>

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<pre style="margin: 0;">-<span id="LC482" class="line" lang="cpp">    <span class="n" style="color: #333;">write_row</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">write_row</span><span class="p">[(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff left right">)</span></span><span class="n" style="color: #333;">dim</span><span class="p">]);</span></span>

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<pre style="margin: 0;">+<span id="LC482" class="line" lang="cpp">    <span class="n" style="color: #333;">write_row</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">write_row</span><span class="p">[</span><span class="n" style="color: #333;"><span class="idiff left">S_CAST</span></span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;">dim</span><span class="p"><span class="idiff right">)</span>]);</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC483" class="line" lang="cpp">  <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC484" class="line" lang="cpp"></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC485" class="line" lang="cpp">  <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">SvdcmpC</span><span class="p">(</span><span class="n" style="color: #333;">dim</span><span class="p">,</span> <span class="n" style="color: #333;">half_inverted</span><span class="p">,</span> <span class="n" style="color: #333;">dbl_1d_buf</span><span class="p">,</span> <span class="n" style="color: #333;">dbl_2d_buf</span><span class="p">));</span></span>

</pre>

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<br>

</li>

<li id="77152f1b1412f42b6493e48b39abf3be847a626f">

<a href="https://salsa.debian.org/med-team/plink2/-/commit/16f76ff3c979f6cbac0c68b2937c6ff40f6d666f#77152f1b1412f42b6493e48b39abf3be847a626f"><strong>plink2_merge.cc</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2886" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2886" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2886,7 +2886,8 @@ PglErr ScanPvarsAndMergeHeader(const PmergeInfo* pmip, MiscFlags misc_flags, uin</td>

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<pre style="margin: 0;"> <span id="LC2886" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">//    depending on --sort-vars setting.</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="2887" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2887" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// See also SortChr() in plink2_data.cc.  This is a bit simpler since we</span></span>

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<td class="old_line diff-line-num" data-linenumber="2888" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="2888" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2888" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// don't need the sort_idxs to be dense.</span></span>

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<td class="old_line diff-line-num old" data-linenumber="2889" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="2889" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2889" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">chr_code_end</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cip</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_code</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">name_ct</span><span class="p">;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC2889" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">max_code_p1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cip</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_code</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC2890" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">chr_code_end</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">max_code_p1</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">name_ct</span><span class="p">;</span></span>

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<td class="new_line diff-line-num" data-linenumber="2891" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2891" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">chr_idx_to_sort_idx</span><span class="p">;</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2892" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2892" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span><span class="n" style="color: #333;">bigstack_end_alloc_u32</span><span class="p">(</span><span class="n" style="color: #333;">chr_code_end</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">chr_idx_to_sort_idx</span><span class="p">)))</span> <span class="p">{</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2893" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">ScanPvarsAndMergeHeader_ret_NOMEM</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2907" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2908" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2907,12 +2908,13 @@ PglErr ScanPvarsAndMergeHeader(const PmergeInfo* pmip, MiscFlags misc_flags, uin</td>

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<pre style="margin: 0;"> <span id="LC2908" class="line" lang="cpp">      <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC2909" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333;">nonstd_names</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cip</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">nonstd_names</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC2910" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">name_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">name_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">name_ct</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">name_idx</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">-<span id="LC2910" class="line" lang="cpp">        <span class="n" style="color: #333;">nonstd_sort_buf</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span><span class="p">].</span><span class="n" style="color: #333;">strptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nonstd_names</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span><span class="p">];</span></span>

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<pre style="margin: 0;">+<span id="LC2911" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">// bugfix (17 Feb 2022): first non-null nonstd_names[] entry is at</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="2912" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC2912" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">// [max_code_p1], not [0]</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="2913" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC2913" class="line" lang="cpp">        <span class="n" style="color: #333;">nonstd_sort_buf</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span><span class="p">].</span><span class="n" style="color: #333;">strptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nonstd_names</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">max_code_p1</span><span class="p">];</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2914" class="line" lang="cpp">        <span class="n" style="color: #333;">nonstd_sort_buf</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span><span class="p">].</span><span class="n" style="color: #333;">orig_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name_idx</span><span class="p">;</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2915" class="line" lang="cpp">      <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC2916" class="line" lang="cpp">      <span class="c1" style="color: #998; font-style: italic;">// nonstd_names are not allocated in main workspace, so can't overread.</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC2917" class="line" lang="cpp">      <span class="n" style="color: #333;">StrptrArrSortMain</span><span class="p">(</span><span class="n" style="color: #333;">name_ct</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">sort_vars_mode</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">kSortAscii</span><span class="p">),</span> <span class="n" style="color: #333;">nonstd_sort_buf</span><span class="p">);</span></span>

</pre>

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<td class="new_line diff-line-num old" data-linenumber="2918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2915" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">max_code_p1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cip</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_code</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

</pre>

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<td class="new_line diff-line-num" data-linenumber="2918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2918

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<pre style="margin: 0;"> <span id="LC2918" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">name_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">name_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">name_ct</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">name_idx</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

</td>

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<td class="old_line diff-line-num" data-linenumber="2917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2917

</td>

<td class="new_line diff-line-num" data-linenumber="2919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2919

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<pre style="margin: 0;"> <span id="LC2919" class="line" lang="cpp">        <span class="n" style="color: #333;">chr_idx_to_sort_idx</span><span class="p">[</span><span class="n" style="color: #333;">max_code_p1</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">nonstd_sort_buf</span><span class="p">[</span><span class="n" style="color: #333;">name_idx</span><span class="p">].</span><span class="n" style="color: #333;">orig_idx</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name_code_start</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">name_idx</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="2918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2918

</td>

<td class="new_line diff-line-num" data-linenumber="2920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2920

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC2920" class="line" lang="cpp">      <span class="p">}</span></span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="436d5ebb95c2149ac987678ddff33cffca2ea965">

<a href="https://salsa.debian.org/med-team/plink2/-/commit/16f76ff3c979f6cbac0c68b2937c6ff40f6d666f#436d5ebb95c2149ac987678ddff33cffca2ea965"><strong>plink2_psam.cc</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

<tr class="line_holder match" id="" style="line-height: 1.6;">

<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1252,7 +1252,7 @@ PglErr LoadPhenos(const char* pheno_fname, const RangeList* pheno_range_list_ptr</td>

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<td class="old_line diff-line-num" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1252

</td>

<td class="new_line diff-line-num" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1252

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<pre style="margin: 0;"> <span id="LC1252" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">LoadPhenos_ret_MALFORMED_INPUT_WW</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1253

</td>

<td class="new_line diff-line-num" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1253

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1253" class="line" lang="cpp">      <span class="p">}</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="1254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1254

</td>

<td class="new_line diff-line-num" data-linenumber="1254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1254

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1254" class="line" lang="cpp">      <span class="n" style="color: #333;">SetBit</span><span class="p">(</span><span class="n" style="color: #333;">first_sample_uidx</span><span class="p">,</span> <span class="n" style="color: #333;">already_seen</span><span class="p">);</span></span>

</pre>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1255

</td>

<td class="new_line diff-line-num old" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1255" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span><span class="n" style="color: #333;">S_CAST</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uintptr_t</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_bigstack_end</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">bigstack_base_copy</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">pheno_info_alloc_byte_ct</span><span class="p"><span class="idiff left right">)</span></span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">xid_idx_end</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">xid_idx_start</span><span class="p">))</span> <span class="p">{</span></span>

</pre>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1255

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1255" class="line" lang="cpp">      <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span><span class="n" style="color: #333;">S_CAST</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uintptr_t</span><span class="p">,</span> <span class="n" style="color: #333;">tmp_bigstack_end</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">bigstack_base_copy</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;">pheno_info_alloc_byte_ct</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">xid_idx_end</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">xid_idx_start</span><span class="p">))<span class="idiff right">))</span></span> <span class="p">{</span></span>

</pre>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1256

</td>

<td class="new_line diff-line-num" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1256

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1256" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">LoadPhenos_ret_NOMEM</span><span class="p">;</span></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="1257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1257

</td>

<td class="new_line diff-line-num" data-linenumber="1257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1257

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1257" class="line" lang="cpp">      <span class="p">}</span></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="1258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1258

</td>

<td class="new_line diff-line-num" data-linenumber="1258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1258

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1258" class="line" lang="cpp">      <span class="n" style="color: #333;">tmp_bigstack_end</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">pheno_info_alloc_byte_ct</span><span class="p">;</span></span>

</pre>

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