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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-vdb">Debian Med / ncbi-vdb</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/25e5500acff8cf47edaa02d86b209059b45d076f">25e5500a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T11:53:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/2d5c2d9f64259128155a08b5204856eae0190f24">2d5c2d9f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T11:53:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/ec1467e0c0ee51807af6d31d5e53e76494f6d026">ec1467e0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T11:53:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.0+dfsg'
Update to upstream version '3.0.0+dfsg'
with Debian dir f47f7373b4aac89f985c249ba9a05e5067449bde</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/2a57087c2ecfedd1b4cfd71b38e705b9511c624f">2a57087c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T11:58:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop deactivated patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/86d5e111c96e80efd4ff735164cc1b56dd434049">86d5e111</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T11:59:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivate all patches regarding old upstream build system
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/2beb120b3f7409c2032936a404098d721dce0e08">2beb120b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T14:13:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switch to cmake build system
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/933aaa8edb507bd22d98d6010b9230307de6a57a">933aaa8e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-19T14:15:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert unintended changes to upstream source
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
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.gitattributes
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
test/ngs-java/Makefile
→
CMakeLists.txt
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#8aff1fb8da0999d8ee716133633d0de7f173339b">
build/Makefile.env
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<li class="file-stats">
<a href="#ea5ef65f36858e36054e28ea502a34803ee191cd">
<span class="deleted-file">
−
build/Makefile.shell
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<li class="file-stats">
<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
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<li class="file-stats">
<a href="#cbb7ae9139428cbde55ca30ed5d01e7696c3b7a2">
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build/common.cmake
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<li class="file-stats">
<a href="#f5aa8741e30275380fa236444586ca03b6a58fb4">
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build/env.cmake
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build/install-root.sh
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<a href="#c6465a5884ce2314e3baf27ac82ff53b38fbd04e">
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build/lift.sh
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<a href="#09be8533ff0a6ee5d577f971145ed449399fcda4">
configure
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#7b02d8f2ae25041aed1e008c1e20c93b1e29ea65">
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debian/patches/debug_configure.patch
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<li class="file-stats">
<a href="#a5bb25ef9416f467faf17d2b820b35fcd9e6af04">
<span class="deleted-file">
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debian/patches/fix_2.10.9_refseq_race.patch
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<a href="#45e9f11cace1e67ae64d0cb9089b82ddd78797f2">
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debian/patches/fix_cmake.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#f1960eb11d100e5d1f2dbf5e0c94c39bce85b17b">
debian/patches/zstd.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#fa8c28a8ccd3b1d8ea83d195d2238eedd3580f18">
interfaces/align/align.vschema
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<li class="file-stats">
<a href="#9323e1c98b6b571580181a258169ee7e42dabb02">
interfaces/align/samextract-lib.h
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<li class="file-stats">
<a href="#74182ff68e791b261c57d63d36cd21064aec43ad">
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interfaces/align/samextract-pool-priv.h
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<li class="file-stats">
<a href="#028bd53724db50a826e780903fd3e65fe12a3dd5">
libs/ngs/BAM_Record.h
→
interfaces/align/samextract-priv.h
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<li class="file-stats">
<a href="#42bf88027e1515886e525641a9dfabe79d1d610d">
libs/ngs/extern.h
→
interfaces/cc/clang/compiler.h
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<a href="#515c5901b982dd65a4d6256d2b2e38b7eb7ad616">
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interfaces/cc/clang/noarch/bitstr.h
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<a href="#64f757ce29fa1f59287a48146728b153905e4339">
libs/ngs/CSRA1_PileupEvent.h
→
interfaces/cc/clang/va_copy.h
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<li class="file-stats">
<a href="#a3493073ff147fa4322e96db45bb91a25acf12fc">
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interfaces/cc/clang/x86_64/arch-impl.h
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<h5>The diff was not included because it is too large.</h5>
</div>
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