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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/b91c52c132901bb2e0cb0a54ab4cbfbac3b783e3">b91c52c1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T08:30:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.0+ds1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/2fec33720ca41b363164aba80b9b665d95fc6a69">2fec3372</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T08:30:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/94312cd5f912d919086d7788f6ff0b74f3e73394">94312cd5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T08:31:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.7.0+ds1'
Update to upstream version '1.7.0+ds1'
with Debian dir 61085c2de6268c624971611a19474e01b2684c63</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/0311071cdc0d1015fdc560aafdd664cafad8ca68">0311071c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:05:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update code copy of pufferfish
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/08c06fec89b08f8a9668245e38b7b5d326cab4a7">08c06fec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T14:38:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cmake has issues in debian/external/pufferfish. For the moment
try to package external dependency https://salsa.debian.org/med-team/twopaco
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#a210747fce99a58b19b79b74b4fc8e26a93f8be0">
<span class="deleted-file">
−
debian/external/pufferfish/.clang-format
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee588d253ff22ffceb08447d6319530c2cd004e8">
<span class="deleted-file">
−
debian/external/pufferfish/.drone.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#20a38a251c8dda15fd29a9c75a1f43890f708381">
<span class="deleted-file">
−
debian/external/pufferfish/.drone/build.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#e5304d180a52a23afbdc7127559be69e0c50ee2c">
<span class="deleted-file">
−
debian/external/pufferfish/.drone/copy_build.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#76e4bc7e050c5cd5ca1f986898b7900522666981">
<span class="deleted-file">
−
debian/external/pufferfish/.drone/unit_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#c10481dd8fb923699afc0bb48ad3c84a726faa81">
<span class="deleted-file">
−
debian/external/pufferfish/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#bab0168e08feaed4f313be44186d935586cb504a">
debian/external/pufferfish/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ea4138da900ff6f23c2a470562683e24bc34dd2">
<span class="deleted-file">
−
debian/external/pufferfish/docker/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#82b65ad01e420809f356661bc730c5c918424f9b">
debian/external/pufferfish/external/twopaco/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#709c32d97d3d0936fd7ef98f654b4db6c7df35a4">
debian/external/pufferfish/external/twopaco/graphconstructor/vertexenumerator.cpp
</a>
</li>
<li class="file-stats">
<a href="#c6ed0a8fc2f1a73d271c09a5598d5bb5b682c785">
debian/external/pufferfish/external/twopaco/graphdump/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#2f77f83176ef91846abdd3d23d0a20b17a14546e">
debian/external/pufferfish/include/CommonTypes.hpp
</a>
</li>
<li class="file-stats">
<a href="#9c5f6af6d158fae05f24f0cdbfdb109abc30820a">
debian/external/pufferfish/include/FastxParser.hpp
</a>
</li>
<li class="file-stats">
<a href="#9d49b6d883b0ee8a9df68d140bf8cf1c364bf076">
debian/external/pufferfish/include/FastxParserThreadUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#0ebfbc72427573245c33a957b89349d5bbbac588">
debian/external/pufferfish/include/MemChainer.hpp
</a>
</li>
<li class="file-stats">
<a href="#ee160437f6cab1186771c4db1c30ba8db6eff232">
debian/external/pufferfish/include/MemCollector.hpp
</a>
</li>
<li class="file-stats">
<a href="#187aee0f9335449c3ff82e4310e032099c77ca13">
debian/external/pufferfish/include/Util.hpp
</a>
</li>
<li class="file-stats">
<a href="#724472e3abacd8d842df3bb5654fdada613a5deb">
debian/external/pufferfish/include/Cedar.hpp
→
debian/external/pufferfish/include/cedar/Cedar.hpp
</a>
</li>
<li class="file-stats">
<a href="#87e8f825a602601d784e7693de8720bf8f07b8bd">
debian/external/pufferfish/include/EquivalenceClassBuilder.hpp
→
debian/external/pufferfish/include/cedar/EquivalenceClassBuilder.hpp
</a>
</li>
<li class="file-stats">
<a href="#cd1325d3936ce345a16b4383dc830eea8e41e14d">
debian/external/pufferfish/include/PuffMappingReader.hpp
→
debian/external/pufferfish/include/cedar/PuffMappingReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#d067b32d5030154dca38497bae2dc10466fec78f">
debian/external/pufferfish/include/SAMReader.hpp
→
debian/external/pufferfish/include/cedar/SAMReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#fe1725d90c48492c9fbdd475e18cb16774483a1e">
debian/external/pufferfish/include/TargetGroup.hpp
→
debian/external/pufferfish/include/cedar/TargetGroup.hpp
</a>
</li>
<li class="file-stats">
<a href="#1c47984bbe517c2b85b2f354cd90a96412e74a26">
debian/external/pufferfish/include/Taxa.h
→
debian/external/pufferfish/include/cedar/Taxa.h
</a>
</li>
<li class="file-stats">
<a href="#84b076d620162f5563bd44aa238bca775d689b49">
<span class="deleted-file">
−
debian/external/pufferfish/include/chobo/optional.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2b3451feb42ec34e2cb27e1aeb2384eb2b9696ed">
<span class="deleted-file">
−
debian/external/pufferfish/include/chobo/vector.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#325e94e2cd5e260a5d132aafc8ef5a2e24035bb6">
<span class="deleted-file">
−
debian/external/pufferfish/include/chobo/vector_ptr.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#6a8bfec4c87a5cc097e8e2b837d52fa7e3ac03da">
<span class="deleted-file">
−
debian/external/pufferfish/include/chobo/vector_view.hpp
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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