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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pufferfish">Debian Med / pufferfish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/a5dd6dfba68442fae7f87c010a1321dbad4d9fef">a5dd6dfb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:00:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/b5fcc2c5d04cf6eb892c40e86501a57df5099487">b5fcc2c5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:01:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/a14b9dd61987f49ddeac0f30792ab481dc76225b">a14b9dd6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:01:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/2527f533ad48bc3e4fb4a569440338306123c83a">2527f533</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:01:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.7.0'
Update to upstream version '1.7.0'
with Debian dir c057258eeb4e0888a6229c31b4456bafd622b3ac</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/184f32d6561b788a28053204f17ac026e6ee755e">184f32d6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T12:01:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/e7ae20859dcee53779e92964f67a49f37454ad4b">e7ae2085</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-02-20T13:52:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches
</pre>
</li>
</ul>
<h4>28 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#a5d7130a87d819a848732eeb001d32bed52f914f">
debian/patches/use-debian-libs
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#b859ee800f3e2d1127d9853a67d5a659f6b33f6c">
<span class="new-file">
+
examples/run_yeast_example.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0cdcd8b6fa9cad7b7edf84337624bd68723d9a99">
external/twopaco/graphdump/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#3b12863406c51a16e8fd4bbbb8dd1fa9ad1d9c24">
include/CommonTypes.hpp
</a>
</li>
<li class="file-stats">
<a href="#5fb49382fac3ea217a9d6370073f917b12e9e034">
include/FastxParser.hpp
</a>
</li>
<li class="file-stats">
<a href="#335609a35be34ca99f8e15537a878ae3e11a6051">
include/FastxParserThreadUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#55b80417ada337567eab3c468442b3f6adecfa14">
include/MemChainer.hpp
</a>
</li>
<li class="file-stats">
<a href="#1e611787eca8d4d72a3cb5c9fb2540c530f467cd">
include/MemCollector.hpp
</a>
</li>
<li class="file-stats">
<a href="#90d9889548353380c5f27a807e12057452f96e71">
include/Util.hpp
</a>
</li>
<li class="file-stats">
<a href="#c24a4dd3c08438b25d36bfdf05b3da2a85146e4b">
include/Cedar.hpp
→
include/cedar/Cedar.hpp
</a>
</li>
<li class="file-stats">
<a href="#a40f887d51665e6bad5b0a7286fa78c5b145cc7e">
include/EquivalenceClassBuilder.hpp
→
include/cedar/EquivalenceClassBuilder.hpp
</a>
</li>
<li class="file-stats">
<a href="#519e0c5b630151ef062f4cf0a1905a91f9d7e598">
include/PuffMappingReader.hpp
→
include/cedar/PuffMappingReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#f5847899ca07ad974da6d7dbcf97e8cf8a8a93cc">
include/SAMReader.hpp
→
include/cedar/SAMReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#f1fb07f251d8a02e5d0368b5d8a6de1fd7ef24a1">
include/TargetGroup.hpp
→
include/cedar/TargetGroup.hpp
</a>
</li>
<li class="file-stats">
<a href="#16072a9ef0232838da79ed77f07d1a333f44bdca">
include/Taxa.h
→
include/cedar/Taxa.h
</a>
</li>
<li class="file-stats">
<a href="#01ce47ca71c9f5ffee70f90856f702cb89415a7e">
<span class="deleted-file">
−
include/chobo/optional.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#640a264fc6a88afd8e2a4349c5de054ee2d83108">
<span class="deleted-file">
−
include/chobo/vector.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9acb0f60baa29fb64088d95f0b3c5ca80fcc4d75">
<span class="deleted-file">
−
include/chobo/vector_ptr.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7acf7277016e7e1edd26b7a4e535508c617bcaa2">
<span class="deleted-file">
−
include/chobo/vector_view.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#de581739191968c526c0615f79730559639a1335">
include/compact_vector/compact_iterator.hpp
</a>
</li>
<li class="file-stats">
<a href="#b6de805fdac0781d12cd98030024ff2bc7779ef7">
include/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#06313f9ee1f53a33829e5868a2d71ccb96958964">
include/concurrentqueue.h
</a>
</li>
<li class="file-stats">
<a href="#1c3456ddb894792386a21c4c680e822800cbf8be">
<span class="new-file">
+
include/itlib/dynamic_bitset.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#75d4f8118f6f4ebe0225e654b701409cba52df68">
<span class="new-file">
+
include/itlib/expected.hpp
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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