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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/drop-seq">Debian Med / drop-seq</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/7eda9a00dac4a046658917fa7b90234f3d129caa">7eda9a00</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2022-02-22T21:15:44+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depending on libbiojava5-java instead of libbiojava4-java
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<strong><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/6ee384c53153d64f6960d5c0fd4cd9a5f23c381f">6ee384c5</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2022-02-22T22:19:15+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#9741480530ebc774872ac828bd1c250d611e9d44">
debian/drop-seq-tools.manifest
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">drop-seq (2.5.1+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Depending on libbiojava5-java instead of libbiojava4-java</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> Tue, 22 Feb 2022 21:15:50 +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">drop-seq (2.5.1+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * New upstream version</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Uploaders: Andreas Tille <tille@debian.org></td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> javahelper,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> default-jdk-headless,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> libbiojava<span class="idiff left right">4.0</span>-java,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> libbiojava<span class="idiff left right">5</span>-java,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libhtsjdk-java,</span>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libpicard-java,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libcommons-collections4-java,</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,7 @@ Depends: ${java:Depends},</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> default-jre | java-runtime,</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> java-wrappers,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> picard-tools,</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> libbiojava<span class="idiff left right">4.0</span>-java,</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> libbiojava<span class="idiff left right">5</span>-java,</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libpicard-java,</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libcommons-collections4-java,</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> libcommons-lang-java,</span>
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<li id="9741480530ebc774872ac828bd1c250d611e9d44">
<a href="https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f#9741480530ebc774872ac828bd1c250d611e9d44"><strong>debian/drop-seq-tools.manifest</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">usr/share/java/dropseq.jar:</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> Main-Class: org.broadinstitute.dropseqrna.cmdline.DropSeqMain</span>
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<td class="old_line diff-line-num old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava<span class="idiff left">4</span>-alignment.jar /usr/share/java/biojava<span class="idiff right">4</span>-core.jar</span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava<span class="idiff left">5</span>-alignment.jar /usr/share/java/biojava<span class="idiff right">5</span>-core.jar</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,8 +17,8 @@ override_dh_auto_configure:</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh_auto_configure</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> mkdir -p lib/test</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> ln -s /usr/share/java/biojava<span class="idiff left">4</span>-alignment.jar lib/biojava<span class="idiff right">4</span>-alignment.jar</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> ln -s /usr/share/java/biojava<span class="idiff left">4</span>-core.jar lib/biojava<span class="idiff right">4</span>-core.jar</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> ln -s /usr/share/java/biojava<span class="idiff left">5</span>-alignment.jar lib/biojava<span class="idiff right">5</span>-alignment.jar</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ln -s /usr/share/java/biojava<span class="idiff left">5</span>-core.jar lib/biojava<span class="idiff right">5</span>-core.jar</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ln -s /usr/share/java/commons-io.jar lib/commons-io.jar</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar</span>
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<td class="old_line diff-line-num" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar</span>
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