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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/-/commit/44e17c9a5cd456522ba28f85e45c5b977ff0ba74">44e17c9a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-03-07T14:53:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.0+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#01a718df87a96135eb956401504e555421dc5a3d">
.clang-format
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#97b03698cb36b558ef2b83306185f1493f428d44">
include/pbbam/AlignmentPrinter.h
</a>
</li>
<li class="file-stats">
<a href="#f747de5a3dc8c782bb99b25c9c7e5c8dfac85b5b">
include/pbbam/BaiIndexCache.h
</a>
</li>
<li class="file-stats">
<a href="#9b8e7465fdabd2180a1985fc676ea4cf29c95d7d">
include/pbbam/BaiIndexedBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#e11de4080cabe1fe6fbdeab22b0f064fdbeab822">
include/pbbam/BamFile.h
</a>
</li>
<li class="file-stats">
<a href="#accf87f74fdd46233f3ca7733c793ca67088e74b">
include/pbbam/BamFileMerger.h
</a>
</li>
<li class="file-stats">
<a href="#460961253fa25e9fb04edd9d56917c4a055683d4">
include/pbbam/BamHeader.h
</a>
</li>
<li class="file-stats">
<a href="#3a425e9a92a7ed061a49ea98c687bb30cd748500">
include/pbbam/BamReader.h
</a>
</li>
<li class="file-stats">
<a href="#97939080c14fd57f90725f590b1094f8f0ee9f10">
include/pbbam/BamRecord.h
</a>
</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#158e05e89acca4473ffa89f3fc109a051188ae4c">
include/pbbam/BamRecordTag.h
</a>
</li>
<li class="file-stats">
<a href="#b96a662b54ae36b7eea4f8ddbc5f90133ff94dff">
include/pbbam/BamRecordView.h
</a>
</li>
<li class="file-stats">
<a href="#941c981d5e65eb46de63f4968a345c5aa46c0385">
include/pbbam/BamTagCodec.h
</a>
</li>
<li class="file-stats">
<a href="#213872121f6ad280d08d4b11948914a21bd57a4d">
include/pbbam/BamWriter.h
</a>
</li>
<li class="file-stats">
<a href="#c3773cf4ce11c824ff8165babb6ff3473e82ca26">
include/pbbam/BgzipFastaWriter.h
</a>
</li>
<li class="file-stats">
<a href="#0b854c9ccc18c4f49e367dcbf0d728fbf4b18681">
include/pbbam/BgzipFastqWriter.h
</a>
</li>
<li class="file-stats">
<a href="#d0cddba547d6512eef96021d550c8018285b3c44">
include/pbbam/Cigar.h
</a>
</li>
<li class="file-stats">
<a href="#486d25e58000b676862d8467ecbf87812a5fcd1f">
include/pbbam/CollectionMetadata.h
</a>
</li>
<li class="file-stats">
<a href="#e05d4ab227d906896bf3f3542deee449cb8bf6b1">
include/pbbam/Compare.h
</a>
</li>
<li class="file-stats">
<a href="#180b1c98d5315b40042488cfb6dc31f5165a5ea1">
include/pbbam/CompositeBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#90781bf24baef6a77f5133c13c5e7df3a60dbdc0">
include/pbbam/CompositeFastaReader.h
</a>
</li>
<li class="file-stats">
<a href="#13e6f05c8e887e418c96dbd9ea25d2567e409652">
include/pbbam/DataSet.h
</a>
</li>
<li class="file-stats">
<a href="#1e4911ad4aa317b1745074f1a0c4dfc639f0f991">
include/pbbam/DataSetTypes.h
</a>
</li>
<li class="file-stats">
<a href="#b0500c682cf6f4a78bac73e5426b916d17557088">
include/pbbam/EntireFileQuery.h
</a>
</li>
<li class="file-stats">
<a href="#6aaf4d0cb3b00cd35caf53e781c3947897b5886c">
include/pbbam/FaiIndex.h
</a>
</li>
<li class="file-stats">
<a href="#285bcc98cab0311dd7a49bd6d30b3d174acc49af">
include/pbbam/FastaCache.h
</a>
</li>
<li class="file-stats">
<a href="#d4afad0c8ef8af061a0d4236d1fb0099eb9e2f6b">
include/pbbam/FastaReader.h
</a>
</li>
<li class="file-stats">
<a href="#907e16808e07760d10d139485a1fda6cdbb36c7d">
include/pbbam/FastaSequenceQuery.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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