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GitLab

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<h3>

Nilesh Patra pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/busco">Debian Med / busco</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/busco/-/commit/e8033ce1480bb33e7d2e16edcbe68a3e403ec5a7">e8033ce1</a></strong>

<div>

<span>by Nilesh Patra</span>

<i>at 2022-03-14T00:35:46+05:30</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.3.0</pre>

</li>

</ul>

<h4>30 changed files:</h4>

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<li class="file-stats">

<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">

CHANGELOG

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<li class="file-stats">

<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">

LICENSE

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<li class="file-stats">

<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">

README.md

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<li class="file-stats">

<a href="#d0258992426c6db3dfddea46b6a3778071bcad9a">

scripts/generate_plot.py

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</li>

<li class="file-stats">

<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">

setup.py

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<li class="file-stats">

<a href="#de7754708bf8aa012a49a842a0d52b6628af3d59">

src/busco/AutoLineage.py

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<li class="file-stats">

<a href="#e497bbf996017c0692c161d2cfed28374276cc73">

src/busco/BuscoConfig.py

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</li>

<li class="file-stats">

<a href="#187e8b3b00a66c92055c44aac0cd5c916c6c913e">

src/busco/BuscoDownloadManager.py

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<li class="file-stats">

<a href="#ea2771659c3ac27a7eedddf367d04f0deb13246b">

src/busco/BuscoLogger.py

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<li class="file-stats">

<a href="#414e3994e90f7a52298faa998003b76c548435da">

src/busco/BuscoPlacer.py

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<li class="file-stats">

<a href="#a8fd6f8fc327bd92758f2c1e85bd45f1bad18df0">

src/busco/BuscoRunner.py

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<a href="#8a51b069da821add214ff0450e58d058e866eb0c">

src/busco/ConfigManager.py

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<li class="file-stats">

<a href="#917b5408af6264ce2b46fc905eaf0095c9aa6bca">

src/busco/__init__.py

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<li class="file-stats">

<a href="#ba1a56246dbcc4652eb6c8edd5d818e5b5c81d88">

src/busco/_version.py

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<li class="file-stats">

<a href="#327451a27744b5461b22fe5b3c3f230fdae35ad7">

src/busco/analysis/Analysis.py

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<li class="file-stats">

<a href="#cf0fa70998d90d794d0bbb251526f730829daf8b">

src/busco/analysis/BuscoAnalysis.py

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<li class="file-stats">

<a href="#38e7c7424f4128a85c46ceb416b47ef2236e42b9">

src/busco/analysis/GeneSetAnalysis.py

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<li class="file-stats">

<a href="#0750dd8caad8daa319bd078a0d80872708eb7fa7">

src/busco/analysis/GenomeAnalysis.py

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<li class="file-stats">

<a href="#ebcdfbf3c61b5f1c742810606673eae398f762bc">

src/busco/analysis/TranscriptomeAnalysis.py

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<li class="file-stats">

<a href="#9d54a8efc4f30849596104b53c7b5221e320b1c7">

src/busco/busco_tools/Toolset.py

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<li class="file-stats">

<a href="#df66f82199021e386615cdfb8a774a29ed2f241b">

src/busco/busco_tools/augustus.py

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<li class="file-stats">

<a href="#44a7a9c3d5eacdcf67af9565b069a28d0ef5092d">

src/busco/busco_tools/base.py

</a>

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<li class="file-stats">

<a href="#ceda4baf9d2597a6f78ef5b8def54e0d9bcab618">

src/busco/busco_tools/blast.py

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<li class="file-stats">

<a href="#a5f82d71f925534007d3cb3b900ad8be00859451">

src/busco/busco_tools/hmmer.py

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<li class="file-stats">

<a href="#53f20ac1df6a610b6a21de977367ddb3704f3394">

src/busco/busco_tools/metaeuk.py

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</li>

<li class="file-stats">

<a href="#a8bb1ce5dbb762d6d747877e3cd1a112432603a4">

src/busco/busco_tools/prodigal.py

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<li class="file-stats">

<a href="#bd0e703ba072ee7447fcc5bd1e634475b3438cf9">

src/busco/run_BUSCO.py

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<li class="file-stats">

<a href="#dba59ea4008347497ea58386e70f0fd75cc9a2e4">

test_data/bacteria/expected_log.txt

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<li class="file-stats">

<a href="#11a346fb4c4f7cb01e1e5466e6712687c54fe746">

test_data/eukaryota/expected_log.txt

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<li class="file-stats">

<a href="#ecaba573b4d50cb889221b97937db25cede5aabb">

tests/unittests/AutoLineage_unittests.py

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</ul>

<h5>The diff was not included because it is too large.</h5>

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