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<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/biojava-live">Debian Med / biojava-live</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava-live/-/commit/d7e7285ea56ee15806ccbb412c3254390f68335e">d7e7285e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-26T15:24:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.9.5</pre>
</li>
</ul>
<h4>21 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.cvsignore
→
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#ac97fd8044e211b8965191abd3e1372d4a6075d6">
<span class="new-file">
+
KEYS
</span>
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="deleted-file">
−
LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#01fd5f2e100a5aa4b370b9fd5d48fce9b3de3a55">
<span class="deleted-file">
−
LICENSE.COMMONS
</span>
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</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
<span class="deleted-file">
−
README
</span>
</a>
</li>
<li class="file-stats">
<a href="#fd0339305ff0de616eaf3cb9b865f9e0aed035cc">
<span class="deleted-file">
−
README.biosql
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
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<li class="file-stats">
<a href="#488d4afe671d6abf30636006b4231062e2bffc1d">
<span class="new-file">
+
alignment/pom.xml
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</a>
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<li class="file-stats">
<a href="#3188b6f3caa01305a236f91feed6d9f61e3a168e">
src/org/biojava/bio/alignment/ARAlignment.java
→
alignment/src/main/java/org/biojava/bio/alignment/ARAlignment.java
</a>
</li>
<li class="file-stats">
<a href="#00cf2b3acb9ab6bc4e6ff1f5801dca335f5cef9b">
<span class="new-file">
+
alignment/src/main/java/org/biojava/bio/alignment/AbstractULAlignment.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c5113fba08b5cd0057847fe036aaeb54753e7686">
<span class="new-file">
+
alignment/src/main/java/org/biojava/bio/alignment/AlignmentAlgorithm.java
</span>
</a>
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<li class="file-stats">
<a href="#c7e97574ae09e83e037adfaf75aab8d0a83670b9">
src/org/biojava/bio/alignment/AlignmentElement.java
→
alignment/src/main/java/org/biojava/bio/alignment/AlignmentElement.java
</a>
</li>
<li class="file-stats">
<a href="#1ef81247c223302814f0416481ad0e3d740aa25e">
<span class="new-file">
+
alignment/src/main/java/org/biojava/bio/alignment/AlignmentPair.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#68ad9b9bd3540e4cdce5208474643c242cd2a41b">
src/org/biojava/bio/alignment/EditableAlignment.java
→
alignment/src/main/java/org/biojava/bio/alignment/EditableAlignment.java
</a>
</li>
<li class="file-stats">
<a href="#58ca31500f0569a8c5fe7402e9933ac7f2d44738">
<span class="new-file">
+
alignment/src/main/java/org/biojava/bio/alignment/FlexibleAlignment.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#db665b62386979ef2df5da8d68c3d6aa351a762c">
src/org/biojava/bio/alignment/IllegalAlignmentEditException.java
→
alignment/src/main/java/org/biojava/bio/alignment/IllegalAlignmentEditException.java
</a>
</li>
<li class="file-stats">
<a href="#bc1fcd09178286a1ba206a15e3f704cc95734ff4">
<span class="new-file">
+
alignment/src/main/java/org/biojava/bio/alignment/NeedlemanWunsch.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#99e18d54dbbe151edd90643cc3d03f6091462c02">
src/org/biojava/bio/alignment/QualitativeAlignment.java
→
alignment/src/main/java/org/biojava/bio/alignment/QualitativeAlignment.java
</a>
</li>
<li class="file-stats">
<a href="#466c4f953915eea8d621c142ce1c452e08a2fdc2">
src/org/biojava/bio/alignment/SimpleAlignmentElement.java
→
alignment/src/main/java/org/biojava/bio/alignment/SimpleAlignmentElement.java
</a>
</li>
<li class="file-stats">
<a href="#32c7ef52abd8429d6d5aa54c0a570d256bdfcf2c">
src/org/biojava/bio/alignment/SmithWaterman.java
→
alignment/src/main/java/org/biojava/bio/alignment/SmithWaterman.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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