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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/ac485f3b388208cfc3583bd197d2848ba73252cd">ac485f3b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-04-10T17:59:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/9773f0b9f65a9f78758e08c1618799fe8743de09">9773f0b9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-04-10T17:59:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.14.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/9b0389d980aa0e9612c993eb69d1a56e8c7bfe17">9b0389d9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-04-10T18:02:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.14.0+dfsg'
Update to upstream version '2.14.0+dfsg'
with Debian dir ac2d43771032130480ff704d3c148bd7a2f05457</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/02ba8e4dd52429eb41e5965bda451df6828a489b">02ba8e4d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-04-10T18:06:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/556d5958b51bacb9eb86490257ecbf635c03747b">556d5958</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2022-04-10T18:07:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#802d0cf48e06523644087b90a072da656ca7e334">
Analysis/DifferentialExpression/run_GOseq.pl
</a>
</li>
<li class="file-stats">
<a href="#696f830d290120f2918697e7fee2def939cfdcc7">
Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl
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</li>
<li class="file-stats">
<a href="#2cd3d64d6f04dfa38cd2c19d5eb255a42b622d2b">
Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
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</li>
<li class="file-stats">
<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
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<li class="file-stats">
<a href="#bbb101bc2f90c8750e858f6e53300be082686b61">
Docker/VERSION.txt
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<li class="file-stats">
<a href="#f0c5a1057e0084b29ddc9effb66d4757d272f15f">
Docker/cleanMe.sh
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#d7e0ab6cbbc5dfc01f777131f769071c35a767d7">
PerlLib/CDNA/PASA_alignment_assembler.pm
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<li class="file-stats">
<a href="#78a01f0250461134b78679a3deb61a7b433cf8d7">
PerlLib/COMMON.pm
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<li class="file-stats">
<a href="#fe1f3f0432df49e752b342651a4544704be40e18">
Trinity
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#ceca267677d809d3703205a93d3d29a26b021c1d">
debian/patches/adjust-trimmomatic-adapters-path
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<li class="file-stats">
<a href="#2f41015e2a5973d28455283d554d07f6e9cf3e26">
debian/patches/disable-version-check
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</li>
<li class="file-stats">
<a href="#d6c09299b1f914372840e8fd6fcc850f8a11b236">
debian/patches/hardening
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#dc57bc18aaf815e3e69b3ca9f2884f0d4c8f0926">
debian/patches/submake
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<li class="file-stats">
<a href="#6043880397caaede2502d6dfb2b7278a569046b3">
debian/patches/update-paths
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<li class="file-stats">
<a href="#f3e7b04bd7d232342fbcc48b43ce144698af99d3">
<span class="deleted-file">
−
debian/patches/which_command_v
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</li>
<li class="file-stats">
<a href="#f1942a2de29bde2fab6123425d3effc1c6d089e5">
sample_data/Makefile
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</li>
<li class="file-stats">
<a href="#24000f1a29eda329c4f9549a9c5b6a615131f589">
trinity-plugins/Makefile
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<li class="file-stats">
<a href="#47bc5d0dfe2f4008180506114f96d4d825b32a7e">
trinity-plugins/ParaFly/Makefile
</a>
</li>
<li class="file-stats">
<a href="#94934439ac72e34558054dc65f3761b5657c8af0">
trinity-plugins/ParaFly/config.log
</a>
</li>
<li class="file-stats">
<a href="#0d0b4d11f0d6e3a42906aff6ec26901045dda0e7">
trinity-plugins/ParaFly/config.status
</a>
</li>
<li class="file-stats">
<a href="#90415f747080bbf074e23f3a19581f6a23d283c0">
trinity-plugins/ParaFly/src/Makefile
</a>
</li>
<li class="file-stats">
<a href="#e7350db02cfd20b63d8645e41a2a4df807bd5292">
trinity-plugins/scaffold_iworm_contigs/Makefile
</a>
</li>
<li class="file-stats">
<a href="#5c109cf8fa0fd3bb19528a3ad8ec200d0c86f334">
util/align_and_estimate_abundance.pl
</a>
</li>
<li class="file-stats">
<a href="#c6f5d7a27717d1baba79d87b3286ef1f856057b1">
util/misc/SRA_to_fastq.pl
</a>
</li>
<li class="file-stats">
<a href="#0204b15beae3c1d00d1db5eb91b9463f2ff68a64">
util/misc/blat_util/blat_to_sam.pl
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</li>
<li class="file-stats">
<a href="#eb4c69de938f62032f6f41d88984037be335a75b">
util/misc/run_HISAT.pl
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</li>
<li class="file-stats">
<a href="#b959e01d0538b730506b5903c304a977b2f4d370">
util/misc/run_STAR.pl
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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