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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/artemis">Debian Med / artemis</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/bd09bca8e7ecea7d0b8f0574530b462726a82aff">bd09bca8</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-28T21:20:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Now libbiojava-java provides biojava-core.jar and Maven artifacts
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/3f045321107c6f9dd703fb499838289660bee2cb">3f045321</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-28T21:21:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/88ee5209eb56169373a2ed6d27030714fbe6913b">88ee5209</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-02-28T21:58:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Handling dependencies using maven:Depends substvar
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/dacdba8612449be296a0b013c49b8779896e2830">dacdba86</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-09T21:02:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/0c93ff467062baaf15a36208d056ddc6188b27f4">0c93ff46</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-09T21:05:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 18.2.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/982271d5524243259dffcc733f6a2b480517241d">982271d5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-09T21:05:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/18.2.0+dfsg'
Update to upstream version '18.2.0+dfsg'
with Debian dir 515489cf772c8851f0969980daf0312bc18c3f48</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/c332cb5fa5cccfd53f8a80bd5c0eaf5d61b07344">c332cb5f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-09T21:37:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/47ce9cbe009ea6cb33a47f59d5255deb9b018a2b">47ce9cbe</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-10T22:39:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/9927eec29e8d8fddb6dfc9e04d529b8f8fb0b7f7">9927eec2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-10T22:39:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding versioned dependency on libbiojava-java with version 1:1.9.5+dfsg
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/78f53c287923af3eae8c4bfe6581b4fe0be0b996">78f53c28</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-10T22:40:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/939ecc0f3367050a5cf7e401489e1b0655d450dc">939ecc0f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-10T22:47:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixing an incorrect specification of surefire argLine in pom.xml
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/4c7dcdcad7e62627f9a2bec7247d3b6ee0353db7">4c7dcdca</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-11T08:58:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to experimental
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#354079a72b91a4280407c16a36f47d1986fd85a5">
.classpath
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#dad57a4c245a8007c90257aef0514c8b6a0f600c">
AUTHORS
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f9cd66ddb239f7b01f4383e30ff767bf7c4c52c8">
<span class="deleted-file">
−
SUT.log4j.properties
</span>
</a>
</li>
<li class="file-stats">
<a href="#331b1c060f8aeee7b584650fecb9d0d109fda290">
debian/artemis.manifest
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#58530b38acb0fa3a65612c676abaea46c4a3f2f3">
debian/maven.rules
</a>
</li>
<li class="file-stats">
<a href="#16e5102318b1fc73670c8bc10636982c8efefd0e">
<span class="new-file">
+
debian/patches/fix_surefire_argline.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#371597159c0cb7b9fc4a4cfefb5d408b03e81d8d">
debian/patches/missing_htsjdk_dependency_in_pom.patch
</a>
</li>
<li class="file-stats">
<a href="#2d79086d21603902d1d606d9054e60986e8341a4">
debian/patches/no_install_of_provided_jars.patch
</a>
</li>
<li class="file-stats">
<a href="#a778d0965cd7524f3455d4369ab7818dcbf5d585">
debian/patches/running_build_tests.patch
</a>
</li>
<li class="file-stats">
<a href="#ed6c136d232b2843578317ef9031c55efb6c4a7a">
<span class="deleted-file">
−
debian/patches/samreader.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#6f2db47d73b2ca08518b115254bc36c6823bf067">
debian/patches/using_system_jars_in_pom.patch
</a>
</li>
<li class="file-stats">
<a href="#293e5ef7ccdf0688f62860deab8df91be9a893ca">
etc/log4j.properties
</a>
</li>
<li class="file-stats">
<a href="#3f0db0c3390f8dca704daf86a68affcbd5e4fe61">
etc/versions
</a>
</li>
<li class="file-stats">
<a href="#442292b8a7efeabbe4cc176709b833b1792140ec">
pom.xml
</a>
</li>
<li class="file-stats">
<a href="#25bc9b2d0905e5f7f7a821aa24ba2e3b01fc20d1">
src/main/java/uk/ac/sanger/artemis/components/Splash.java
</a>
</li>
<li class="file-stats">
<a href="#fcb81d61878a8fdac33bda1757bdc639c072d921">
src/main/java/uk/ac/sanger/artemis/components/alignment/BamUtils.java
</a>
</li>
<li class="file-stats">
<a href="#2579b9c311b5da789567d2be461c2fc50e09731e">
src/main/java/uk/ac/sanger/artemis/io/IndexFastaStream.java
</a>
</li>
<li class="file-stats">
<a href="#f8fa6385b7ed16089e96f925cf34b02a2b36f4bd">
<span class="deleted-file">
−
src/test/evosuite/org/gmod/schema/analysis/AnalysisFeature_ESTest.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#13231b641430bb0a59a09311770a6538cb3af77e">
<span class="deleted-file">
−
src/test/evosuite/org/gmod/schema/analysis/AnalysisFeature_ESTest_scaffolding.java
</span>
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<li class="file-stats">
<a href="#484e6d7095e3f6a073c43590c51ac3ea3243d738">
<span class="deleted-file">
−
src/test/evosuite/org/gmod/schema/analysis/AnalysisProp_ESTest.java
</span>
</a>
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<li class="file-stats">
<a href="#8690b03ee3fe2dbabf622b7ada10934667bf6826">
<span class="deleted-file">
−
src/test/evosuite/org/gmod/schema/analysis/AnalysisProp_ESTest_scaffolding.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#9e8b53327b21766e3cb8b37e1f458b88c31e7c13">
<span class="deleted-file">
−
src/test/evosuite/org/gmod/schema/analysis/Analysis_ESTest.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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