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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/f088eabf57c8faf75ddc8831e06f6f97ad803ba7">f088eabf</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-23T20:55:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.27.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/3241a630f060fbd125becd1ea1713dc21bee652a">3241a630</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-23T20:56:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.27.1+dfsg'
Update to upstream version '2.27.1+dfsg'
with Debian dir 6f574defdf7d76fa10c9fd8f2482d7b31377b1d4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/0b37ed0eeb5445c80778b75b60bf8731c12dd100">0b37ed0e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-23T21:02:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/b2db714aa320295a5b120b32ccb83303de213689">b2db714a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-23T21:03:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/bf26678e7235edc0912bb35133b327bac848522e">bf26678e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-23T21:08:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/64fb2c95b3feacd0511871c31484986f006739c4">64fb2c95</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-04-24T08:08:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#e186644cad34bbb8e38eb75706855e6cd177ad48">
debian/patches/10-build.xml.patch
</a>
</li>
<li class="file-stats">
<a href="#4851dcaa1d5c2005435e71f102230da1daac1df0">
debian/patches/20-shadowjar.patch
</a>
</li>
<li class="file-stats">
<a href="#4416da23ca69dd7403c07c230b77bb0c32e0abb1">
debian/patches/30-tests-fix-dataprovider.patch
</a>
</li>
<li class="file-stats">
<a href="#2112a29d6b2dc089fd18634ad82cb140e99b56c6">
debian/patches/40-tests-fix-testng.patch
</a>
</li>
<li class="file-stats">
<a href="#cd0856bacc408b153d6e692efa65918b90c31069">
debian/patches/correct_dataprovider_TestDontMergeAbuttingData.patch
</a>
</li>
<li class="file-stats">
<a href="#a19ab181f42f2952911fb425a841f9a77adf945f">
debian/patches/remove_google_nio.patch
</a>
</li>
<li class="file-stats">
<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#75cbcb0031f249eeac156b0400baccf36e966a0d">
src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#c224cce9721892da1834c94773de15da5dd22df4">
src/main/java/picard/analysis/CollectOxoGMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#b2834490f63ed514ea04878a07bfeb9a3745de6c">
src/main/java/picard/analysis/CollectQualityYieldMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#bd1790f1783da7252384ebb46fb793aebd94697f">
src/main/java/picard/analysis/CollectRawWgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">
src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
</a>
</li>
<li class="file-stats">
<a href="#40de79d6548396ae9e1ce3e6937ea4e1267a94db">
src/main/java/picard/analysis/FingerprintingDetailMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#6fab79cc92f77c5be83a477d545780c04f29d16d">
src/main/java/picard/analysis/FingerprintingSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#2cf71cd7af9450085451f7c25e6b0c455edcf7b5">
src/main/java/picard/analysis/GcBiasDetailMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#384f920fc1c62dfed0e8c229db5ab89cc8df3b39">
src/main/java/picard/analysis/GcBiasSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#b2195ff373297a10a2ddd8f5ff65b30f591a9f06">
src/main/java/picard/analysis/InsertSizeMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#75a67020ec0c300c72da4214582a6374667d0c25">
src/main/java/picard/analysis/JumpingLibraryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#1914f7efb36dc5bc0e2d21c7b0121b6be61785d6">
src/main/java/picard/analysis/RnaSeqMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#3affb329b0212372bedc651006ac7da882325256">
src/main/java/picard/analysis/RrbsCpgDetailMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#44b5b64cecfed24fc039721d4205c3e117232da9">
src/main/java/picard/analysis/RrbsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ea153b8d713cca4a85b110bc193e280e6322d8ad">
src/main/java/picard/analysis/RrbsSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#cd8764eb81707925cc1df2a58b7fd40ec6349c94">
src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#393734d007446557b291436617a31138ffb7f363">
src/main/java/picard/analysis/WgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#91cb0e4b39d5b928b8604c3819224497292b8b31">
src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#c88d1879726bee95cbf45c585065d9e80e8e9cf9">
src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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