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GitLab

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<h3>

Pierre Gruet pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/f088eabf57c8faf75ddc8831e06f6f97ad803ba7">f088eabf</a></strong>

<div>

<span>by Pierre Gruet</span>

<i>at 2022-04-23T20:55:19+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.27.1+dfsg</pre>

</li>

</ul>

<h4>30 changed files:</h4>

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<li class="file-stats">

<a href="#f07866736216be0ee2aba49e392191aeae700a35">

build.gradle

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<li class="file-stats">

<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">

src/main/java/picard/analysis/AlignmentSummaryMetrics.java

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</li>

<li class="file-stats">

<a href="#75cbcb0031f249eeac156b0400baccf36e966a0d">

src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java

</a>

</li>

<li class="file-stats">

<a href="#c224cce9721892da1834c94773de15da5dd22df4">

src/main/java/picard/analysis/CollectOxoGMetrics.java

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</li>

<li class="file-stats">

<a href="#b2834490f63ed514ea04878a07bfeb9a3745de6c">

src/main/java/picard/analysis/CollectQualityYieldMetrics.java

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<li class="file-stats">

<a href="#bd1790f1783da7252384ebb46fb793aebd94697f">

src/main/java/picard/analysis/CollectRawWgsMetrics.java

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<li class="file-stats">

<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">

src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java

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<li class="file-stats">

<a href="#40de79d6548396ae9e1ce3e6937ea4e1267a94db">

src/main/java/picard/analysis/FingerprintingDetailMetrics.java

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<li class="file-stats">

<a href="#6fab79cc92f77c5be83a477d545780c04f29d16d">

src/main/java/picard/analysis/FingerprintingSummaryMetrics.java

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<li class="file-stats">

<a href="#2cf71cd7af9450085451f7c25e6b0c455edcf7b5">

src/main/java/picard/analysis/GcBiasDetailMetrics.java

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<li class="file-stats">

<a href="#384f920fc1c62dfed0e8c229db5ab89cc8df3b39">

src/main/java/picard/analysis/GcBiasSummaryMetrics.java

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<li class="file-stats">

<a href="#b2195ff373297a10a2ddd8f5ff65b30f591a9f06">

src/main/java/picard/analysis/InsertSizeMetrics.java

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<li class="file-stats">

<a href="#75a67020ec0c300c72da4214582a6374667d0c25">

src/main/java/picard/analysis/JumpingLibraryMetrics.java

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<li class="file-stats">

<a href="#1914f7efb36dc5bc0e2d21c7b0121b6be61785d6">

src/main/java/picard/analysis/RnaSeqMetrics.java

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<li class="file-stats">

<a href="#3affb329b0212372bedc651006ac7da882325256">

src/main/java/picard/analysis/RrbsCpgDetailMetrics.java

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<li class="file-stats">

<a href="#44b5b64cecfed24fc039721d4205c3e117232da9">

src/main/java/picard/analysis/RrbsMetrics.java

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<li class="file-stats">

<a href="#ea153b8d713cca4a85b110bc193e280e6322d8ad">

src/main/java/picard/analysis/RrbsSummaryMetrics.java

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<li class="file-stats">

<a href="#cd8764eb81707925cc1df2a58b7fd40ec6349c94">

src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java

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<li class="file-stats">

<a href="#393734d007446557b291436617a31138ffb7f363">

src/main/java/picard/analysis/WgsMetrics.java

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</li>

<li class="file-stats">

<a href="#91cb0e4b39d5b928b8604c3819224497292b8b31">

src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java

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<li class="file-stats">

<a href="#c88d1879726bee95cbf45c585065d9e80e8e9cf9">

src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java

</a>

</li>

<li class="file-stats">

<a href="#10622eebc55d531a6d58705fbdd3b8f4ca95b439">

src/main/java/picard/analysis/directed/HsMetrics.java

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</li>

<li class="file-stats">

<a href="#b781930457631230373e06b822f3c41317bd74f0">

src/main/java/picard/analysis/directed/TargetMetrics.java

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</li>

<li class="file-stats">

<a href="#4ac273c1c3a4e54ba6cb53a39e32de2ac6a942d8">

src/main/java/picard/analysis/directed/TargetedPcrMetrics.java

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<li class="file-stats">

<a href="#97b1b16dc6b5d6a05ea5a9aa50a97510934e5137">

src/main/java/picard/analysis/replicates/IndependentReplicateMetric.java

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</li>

<li class="file-stats">

<a href="#86f8de3a7160324f9cd4ea70a910568b9505f8a4">

src/main/java/picard/arrays/BafRegressMetrics.java

</a>

</li>

<li class="file-stats">

<a href="#cf132dbe9e717d8c260a4178d5b64adf408c06cc">

src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java

</a>

</li>

<li class="file-stats">

<a href="#f91c189fd4550d2b3a19984cf8214fc36e993efb">

src/main/java/picard/arrays/GtcToVcf.java

</a>

</li>

<li class="file-stats">

<a href="#37d4abc808658a932ef049d97eff748f1ba6ffb5">

src/main/java/picard/arrays/VcfToAdpc.java

</a>

</li>

<li class="file-stats">

<a href="#7cb2351835c5eb5d921dcd08c33c72933c10b4d9">

src/main/java/picard/arrays/VerifyIDIntensityContaminationMetrics.java

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</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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