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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/flye">Debian Med / flye</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/flye/-/commit/4d268e567a619d668f3b915cca5d855232b72394">4d268e56</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-05T10:12:24+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.9+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#7676bf80e0f15087674083b65af3b2447ab3d197">
docs/FAQ.md
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<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
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<li class="file-stats">
<a href="#56fe2a53c1e2ac524f33a1db8ee6bf562e536dd7">
docs/NEWS.md
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<li class="file-stats">
<a href="#d6b4130f82f26ccc3be36cf25ebf8d1530c00b6b">
docs/USAGE.md
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<li class="file-stats">
<a href="#6919baf12fa5cd42b89f01656fe5338f8eb3b965">
flye/__build__.py
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<li class="file-stats">
<a href="#6d1dc58311788e330e51514d6a1d5ee3176e5e2e">
flye/__version__.py
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<li class="file-stats">
<a href="#388da2e9eb18d1e3403fbf95c283158ce8e79404">
flye/assembly/assemble.py
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<li class="file-stats">
<a href="#4b27ab2b8a43c85b9e7519be69c49df3204f9f5b">
flye/assembly/repeat_graph.py
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<li class="file-stats">
<a href="#21467d89dd693b4794f1289f348520f720b3061e">
flye/assembly/scaffolder.py
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<li class="file-stats">
<a href="#c85fa245007d9b6301dc8710e657d971035f55d1">
flye/config/bin_cfg/asm_corrected_reads.cfg
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<li class="file-stats">
<a href="#9961a8638d3e2bcbd0067f7c5f43408f2e0b7059">
flye/config/bin_cfg/asm_defaults.cfg
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<li class="file-stats">
<a href="#87cff567fbb00399005895db69c617ef08e9046c">
flye/config/bin_cfg/asm_hifi.cfg
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<li class="file-stats">
<a href="#e949c250dc93c2bda64b8dcd1654af48c89c73c0">
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flye/config/bin_cfg/asm_nano_hq.cfg
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<li class="file-stats">
<a href="#8d8be1bf414dd46740a5270e55a75e9770070429">
flye/config/bin_cfg/asm_raw_reads.cfg
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<li class="file-stats">
<a href="#239616042ec25bfbf8fcb3004fcd14c6680be87f">
flye/config/bin_cfg/asm_subasm.cfg
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<li class="file-stats">
<a href="#e8ae8fb20b8f2fb9f3be052e3d315de1ab681d5c">
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−
flye/config/bin_cfg/nano_r7_homopolymers.mat
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<a href="#2b0096ac41c301e4daeea2b2672bc56910599234">
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flye/config/bin_cfg/nano_r7_substitutions.mat
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<a href="#77baa594f9fb282cfbe27880bf8f9df8d6a43b70">
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flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
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<li class="file-stats">
<a href="#ce40bf326274fb6137fc733673f4fe4aa4e0c64b">
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+
flye/config/bin_cfg/nano_r94_g36_substitutions.mat
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<li class="file-stats">
<a href="#d8afef14880c3324f90e5088956b70d319ab0810">
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flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
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<li class="file-stats">
<a href="#88e38739a59c31713c9cb346b2ad934735f8c91b">
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flye/config/bin_cfg/pacbio_chm13_substitutions.mat
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<li class="file-stats">
<a href="#229a7e891de4b2ebdf4de529d9ed799ce7b7de08">
flye/config/configurator.py
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<li class="file-stats">
<a href="#e9ea77f43625d7b82872849bee0ade9d4783ef45">
flye/config/py_cfg.py
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</li>
<li class="file-stats">
<a href="#04c3bbead23ec6359951eb6220f6e029640d5248">
flye/main.py
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<li class="file-stats">
<a href="#6285fc57044e191144daf152a32548133c0f109d">
flye/polishing/alignment.py
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</li>
<li class="file-stats">
<a href="#b22a6760497af637ca10e2ef0c46288bf92d60c9">
flye/polishing/bubbles.py
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</li>
<li class="file-stats">
<a href="#c84a463fbe0dcff6023d84fe1de0856aee7710cf">
flye/polishing/consensus.py
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</li>
<li class="file-stats">
<a href="#c0a56ca14c419976c0d98f717522a2faf16f0e5b">
flye/polishing/polish.py
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</li>
<li class="file-stats">
<a href="#f8e2bbcecd2293175cbbcc6d279f3e1e0ee32890">
flye/short_plasmids/plasmids.py
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<h5>The diff was not included because it is too large.</h5>
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