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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libssw">Debian Med / libssw</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/c9c6106f955eac1ec9d8a40cc85495ccf3178810">c9c6106f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T07:21:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/ac87897162f36614826fb2cc4e854839f18ba011">ac878971</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T07:21:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/32c127e3dc9ba5e3e253714b7c6149aa74dcad16">32c127e3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T07:22:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.4'

Update to upstream version '1.2.4'
with Debian dir ebb58aab193a0f473bb4d7edbe1e7793691ae404</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/4449bfab8bad75c1c9eef94e09ad755f24b59e8f">4449bfab</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T07:22:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/25c6b310e507968ca51ffff6a33b2f7ade2d9f36">25c6b310</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T09:19:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/effd6940de511f6b4632714ed7ce71e1c63265db">effd6940</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T10:41:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set JAVA_HOME explicitly
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/6d3386b8e7484267cbc37594b3002a491bcab9df">6d3386b8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-05-24T11:34:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream API has changed thus bump SONAME
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#c8d3ba4c647b58833f7ed73c593a3ba3ce78cc46">
<span class="deleted-file">

debian/libssw0.install.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#f42e76fcc99ac21860d851ac910f5b907eeb6b3a">
<span class="new-file">
+
debian/libssw1.install.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#7beec50e0c3ddf37f8d7b8014a7d7df23607654a">
debian/libssw0.symbols

debian/libssw1.symbols
</a>
</li>
<li class="file-stats">
<a href="#75de8a8fba7b2dc8f523b991ff6a523ed2bf920f">
debian/patches/build_all_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#52dc3e58185a550acb60dd82bc30b7c62d391abb">
debian/patches/rename_tool.patch
</a>
</li>
<li class="file-stats">
<a href="#5dc91bdd30262777c0556235b73413cd5865a144">
debian/patches/simde.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#55d5632a29e4dfe633b39497efa3554a26991f65">
<span class="new-file">
+
demo/blosum62.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#7bbe96905d224e4ef9b6241676a0ee94932d3e19">
<span class="new-file">
+
demo/new.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#df0e4caa90dc2ac431eb6ba5305faf8a0e284b6e">
<span class="new-file">
+
demo/old.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#953dea787ebfc7ec6cfb16e329ac3fad36e24098">
<span class="new-file">
+
demo/pRead.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#ca1adc883fa7cae318a7544025e73368f380e7c4">
<span class="new-file">
+
demo/pRef.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#ba2b8a31dd4ce686bef5fd0c5ad5fa9447b881fb">
<span class="new-file">
+
demo/protein1.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#f3425f7ff4e8df66ef0f8b0151caac9ab2789a71">
<span class="new-file">
+
demo/protein2.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#5cf4a933540afe944c2154fc9fce269a512ab6f0">
<span class="new-file">
+
demo/query.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce18ac8d0dec073f5834ae743188f88690e89f99">
<span class="new-file">
+
demo/query2.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#8211e4b2b9cd3dd81013e035545a6a836b70fef3">
<span class="new-file">
+
demo/r1.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#4900f4a91e22398bcbab45dea413b71c6fe68d14">
<span class="new-file">
+
demo/r1_query.fq
</span>
</a>
</li>
<li class="file-stats">
<a href="#177d21c38101fb4e45d3dc053245b33595d131c9">
<span class="new-file">
+
demo/target.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#38e1c3f1ba1ea7a40337ac0d08f28678a3444a6b">
<span class="new-file">
+
demo/target2.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#93cbdd0973c9a7b59e5cef90a94300ab95fd66e5">
<span class="deleted-file">

src/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
</a>
</li>
<li class="file-stats">
<a href="#35fb435cf9b530ce411f4095badbb793a4e1cd78">
src/example.cpp
</a>
</li>
<li class="file-stats">
<a href="#775c43606212921faeaefec26f904a2e14aeffc5">
src/kseq.h
</a>
</li>
<li class="file-stats">
<a href="#3a576e09615c0e19842e5f3ac31e858c9ae7fe41">
src/main.c
</a>
</li>
<li class="file-stats">
<a href="#d2865ccf8daae26eb92ec69a4ec40f059f35ef86">
src/pyssw.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

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<p style="font-size: small; color: #666;">

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<a href="https://salsa.debian.org/med-team/libssw/-/compare/77459033989459e978a00a5fb60415289241f3fd...6d3386b8e7484267cbc37594b3002a491bcab9df">View it on GitLab</a>.
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