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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/mindthegap">Debian Med / mindthegap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/b905744345c06c4c96602510025ab2bf5aefebbc">b9057443</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T11:15:30+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/8b35994a46194da3edbc3ece474d81e3fff0b4cc">8b35994a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T11:15:32+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.3.0'
Update to upstream version '2.3.0'
with Debian dir c5eac33c43b829ab1998d19e8bc2a7dff77d046e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/35d66eb765fc376906e7c0a91a5f8ce4ca6d5dc6">35d66eb7</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T11:15:40+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump Standards-Version to 4.6.1 (no changes needed)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/03ce3fd95ce9c95fd86e1b7ae61bb75c7418e381">03ce3fd9</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T11:16:17+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
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</a>
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#8c2b0239da0ce709b3b1cdb4db436bd013095d6a">
data/reads_r1.fastq
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<li class="file-stats">
<a href="#229172768e5e4f16f160bb59a60f17185d66f4ec">
data/reads_r2.fastq
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<li class="file-stats">
<a href="#4634fca5c7f447885de0bf2ee2071e96ec446d2e">
data/reference.fasta
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#1dd61bb768b613b358467981e3d64ec6394b090d">
doc/MindTheGap_insertion_caller.md
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<li class="file-stats">
<a href="#703284c86e076b7c08d4f8b3e4ece9b08bcdfd5e">
scripts/jenkins/tool-mindthegap-build-debian7-64bits-gcc-4.7.sh
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<li class="file-stats">
<a href="#6a0b0000e222b66c4629f2dea38ece41b4232113">
scripts/jenkins/tool-mindthegap-build-macos-10.9.5-gcc-4.2.1.sh
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<li class="file-stats">
<a href="#2ac129fec1f50dc5452a152bb54ec16bec635724">
scripts/jenkins/tool-mindthegap-release-debian.sh
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<li class="file-stats">
<a href="#742edb99d80b28555748f681b2192004565cd699">
src/FindBreakpoints.hpp
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<li class="file-stats">
<a href="#29b2c0bba706dabdd7e216e658cae5ac395d73d6">
src/FindHeteroInsertion.hpp
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<li class="file-stats">
<a href="#2cd4f140a733f1b4b5ba60b13303261892bf93aa">
src/FindSNP.hpp
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<li class="file-stats">
<a href="#2e26376367d7d6f945de0d8120af2765586832d4">
<span class="new-file">
+
src/FindSmallInsertion.hpp
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<li class="file-stats">
<a href="#5d1c61938574d188b12119e87936ce22c49407a6">
src/Finder.cpp
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<li class="file-stats">
<a href="#5a37c36ef7f6ddb7b647db8e13bf49c965fd7546">
src/Finder.hpp
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<li class="file-stats">
<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">
src/main.cpp
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<li class="file-stats">
<a href="#906b117910dd8b40c789812570b6ea6b9c11dead">
test/full_test/README
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<li class="file-stats">
<a href="#5e5ad02fc78e3a297fa329f2f0536de7524cf3c6">
test/full_test/allele1.fasta
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<li class="file-stats">
<a href="#663bd41f08c1948bff2fd6cd5977f6a4c27c5f01">
test/full_test/allele2.fasta
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<li class="file-stats">
<a href="#eca33a54df289965fe6a85bdb8bcaffa752098b7">
test/full_test/gold.breakpoints
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<li class="file-stats">
<a href="#01e6c0095c39237a1bfc9521003f1aa9cc0fc01f">
test/full_test/gold.insertions.fasta
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<li class="file-stats">
<a href="#c8c1994bf5a622886714f298cf13c1bdff72d28c">
test/full_test/gold.insertions.vcf
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<li class="file-stats">
<a href="#b10c092b7d0dc2e98cf5cacfce65a2504da2ab6c">
test/full_test/gold.othervariants.vcf
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<li class="file-stats">
<a href="#67a55931ce6762bb201dd046914354503475d9c4">
test/full_test/gold_bed.breakpoints
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<li class="file-stats">
<a href="#4080c9c6d095c9d4cdfe76f895c2390e2965c90c">
test/full_test/gold_bed.othervariants.vcf
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<li class="file-stats">
<a href="#7b53f04776f31332bc381ffecb609a18ba6a21e2">
test/full_test/gold_fill.output
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</ul>
<h5>The diff was not included because it is too large.</h5>
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