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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/lamassemble">Debian Med / lamassemble</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lamassemble/-/commit/e97d73a0db84048dfdbe668cf5d6a6b1acf2a196">e97d73a0</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T16:03:58+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add d/gbp.conf
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lamassemble/-/commit/f98a1094605dac64c4bca8bcd4aedcdf5ef368c2">f98a1094</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T16:04:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c10731bab90855781300a1e9cbb02ee8ce39d64b">c10731ba</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T16:04:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.4.2'
Update to upstream version '1.4.2'
with Debian dir 00ae3884c61f7bde27c874a1c011e80cdff7d03f</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lamassemble/-/commit/fd837218cfc81b7eead7a7fdc22596c2aceb9646">fd837218</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-05-29T16:04:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>10 changed files:</h4>
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<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
<span class="deleted-file">
−
.gitattributes
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
debian/examples
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<li class="file-stats">
<a href="#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b">
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+
debian/gbp.conf
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<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
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<li class="file-stats">
<a href="#68af30b4d3f0335f48b9f56d20344ef2e575662c">
debian/tests/test-data/group25.fa
→
debian/tests/data/group25.fa
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<li class="file-stats">
<a href="#6041d94e5b3c9764c6a159157567b835997e7b4e">
debian/tests/test-data/lama-tests.out
→
debian/tests/data/lama-tests.out
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<li class="file-stats">
<a href="#72de6c35b6602886b48be66b789176993267cea9">
debian/tests/test-data/lama-tests.sh
→
debian/tests/data/lama-tests.sh
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<li class="file-stats">
<a href="#ffc2261e5d824ef9d459e641e3b53c66d93d3508">
debian/tests/test-data/rel3-4-train.mat
→
debian/tests/data/rel3-4-train.mat
</a>
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<h4>Changes:</h4>
<li id="24139dae656713ba861751fb2c2ac38839349a7a">
<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#24139dae656713ba861751fb2c2ac38839349a7a"><strong>.gitattributes</strong>
deleted
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">setup.py export-subst</span>
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">tests/ export-ignore</span></pre></td>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="new_line diff-line-num old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">lamassemble (1.4.2-1) <span class="idiff left right deletion">UNRELEASED</span>; urgency=medium</span>
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<td class="new_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">lamassemble (1.4.2-1) <span class="idiff left right addition">unstable</span>; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<span class="idiff left right deletion"><bug></span>)</span>
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<span class="idiff left right addition">1012045</span>)</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sun, 29 May 2022 1<span class="idiff left right deletion">4:15:19</span> +0530</span></pre></td>
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sun, 29 May 2022 1<span class="idiff left right addition">5:27:22</span> +0530</span></pre></td>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,14 @@ Files: debian/*</td>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Copyright: 2022 Nilesh Patra <nilesh@debian.org></span>
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11
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11
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">License: Expat</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Files: debian/tests/data/*</span>
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<td class="old_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Copyright: 2019-2022 Martin Frith</span>
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<td class="old_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">License: Expat</span>
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Comment: The license of these files is same since it is sourced</span>
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<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> from same repo but upstream did not vendor it in tarball.</span>
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18
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Since the file size is pretty less, they are provided in d/tests</span>
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19
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> and also used as examples</span>
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20
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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13
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21
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">License: Expat</span>
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14
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22
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person obtaining a copy</span>
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15
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> of this software and associated documentation files (the "Software"), to deal</span>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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1
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<td class="new_line diff-line-num old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/tests/<span class="idiff left right deletion">test-</span>data/*</span></pre></td>
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1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/data/*</span></pre></td>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b"><strong>debian/gbp.conf</strong></a>
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1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC1" class="line" lang="conf">[<span class="n" style="color: #333;">import</span>-<span class="n" style="color: #333;">orig</span>]</span>
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2
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC2" class="line" lang="conf"><span class="n" style="color: #333;">filter</span>=.<span class="n" style="color: #333;">gitattributes</span></span></pre></td>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#85ccdeeb03055211183e48520592d9a93592b330"><strong>debian/source/lintian-overrides</strong></a>
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1
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1
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;"><pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"># False postive, this is a data file</span>
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2
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<td class="new_line diff-line-num old" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb"><pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">lamassemble source: very-long-line-length-in-source-file debian/tests/<span class="idiff left right deletion">test-</span>data/lama-tests.out line 31 is 43983 characters long (>512)</span></pre></td>
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0"><pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">lamassemble source: very-long-line-length-in-source-file debian/tests/data/lama-tests.out line 31 is 43983 characters long (>512)</span></pre></td>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#68af30b4d3f0335f48b9f56d20344ef2e575662c"><strong>debian/tests/test-data/group25.fa</strong>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#6041d94e5b3c9764c6a159157567b835997e7b4e"><strong>debian/tests/test-data/lama-tests.out</strong>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#72de6c35b6602886b48be66b789176993267cea9"><strong>debian/tests/test-data/lama-tests.sh</strong>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/compare/1af09a9c5561cf7561e37782f58e337c92734eb0...fd837218cfc81b7eead7a7fdc22596c2aceb9646#ffc2261e5d824ef9d459e641e3b53c66d93d3508"><strong>debian/tests/test-data/rel3-4-train.mat</strong>
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