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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1">85e56923</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T20:51:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.13.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/f193987cccb9db47657b6eb9a841819a07f2cb57">f193987c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T20:53:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.13.0+dfsg'
Update to upstream version '2.13.0+dfsg'
with Debian dir 6060db99270fd9424c1f526fb548362ad6df77f5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/84847375293dada110c8a5edbc4559325660dd78">84847375</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T20:57:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/302fe105144d3dca36048629d857203089fc7497">302fe105</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T21:03:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting Standards version to 4.6.1 (no change)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/4c81405936e19fff272f2c7c93a1cf2b1482cd21">4c814059</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T22:03:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing more AWS stuff
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/0e616eb75f81e721bd525e863878216dbcec8543">0e616eb7</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T22:04:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Omit the instantiation of URLDecoder
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/b0c6afc7a21ad5b1fdf8f87fac617a38c1665e85">b0c6afc7</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T22:05:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/5d4fc600c25a892334660e9797fc4151ac6a2fdc">5d4fc600</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T22:08:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Forwarding patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/17e214b8b362d462e5a00ccf6ea9ee43e12dcc20">17e214b8</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T23:05:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#00df9f45d147cfb56b81feb60acdb54b36692838">
<span class="new-file">
+
debian/patches/no_instantiation_of_URLDecoder.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
debian/patches/omit_aws_stuff.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#f21a02492456af68e10747392c75b747fe8656ee">
src/main/java/org/broad/igv/aws/S3LoadDialog.java
</a>
</li>
<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045">
src/main/java/org/broad/igv/batch/CommandExecutor.java
</a>
</li>
<li class="file-stats">
<a href="#3a01485c702a4253b186c11a8e8432e6098f26d3">
src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
→
src/main/java/org/broad/igv/bbfile/BBDataSource.java
</a>
</li>
<li class="file-stats">
<a href="#f8dc67b3f016bf665516355e56e983e310eeff37">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/BBUtils.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ed22943a67385843d51c6b1804b7922c7a1396f">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9865d43e6b2498132950359687d020553e62c61">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#ecaa31983fc5b2f8462b17d2a247e83b0493c89a">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7422da2673d5eb8f757380e3ab97647e7af6ef1">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ada7810b33e59ab34997d66ace9b0787077e165">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f0f4375068395e83977536f822c845c8b64e9c54">
src/main/java/org/broad/igv/blast/BlastMapping.java
</a>
</li>
<li class="file-stats">
<a href="#4fa7e6a9fa80783e181ca7eb76bc773e372468f4">
src/main/java/org/broad/igv/feature/AbstractFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e6d85bc27a3b3cc7ce4513e762b923fcef1803d3">
src/main/java/org/broad/igv/feature/BasicFeature.java
</a>
</li>
<li class="file-stats">
<a href="#f2e2e11252ea2deaca0ccff924082979bf5d37df">
src/main/java/org/broad/igv/feature/Exon.java
</a>
</li>
<li class="file-stats">
<a href="#7f7e50a2c9b33428ef305a630511510e0425afde">
src/main/java/org/broad/igv/feature/FeatureUtils.java
</a>
</li>
<li class="file-stats">
<a href="#fc0db6069d4f73a026472a5b6c9f7b79af642131">
src/main/java/org/broad/igv/feature/IGVFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e9196110bc3184aedf852063f44f30ccc58d368f">
src/main/java/org/broad/igv/feature/Mutation.java
</a>
</li>
<li class="file-stats">
<a href="#c32ebd7fa40a7e1e5049b829990ef84e8ac60702">
src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e946c0fc6e433a2dd8745e71f7ce3fce4b33a10f">
src/main/java/org/broad/igv/feature/UCSCSnpFeature.java
</a>
</li>
<li class="file-stats">
<a href="#f5e372e60065509088e6169254ddc3453576aaa2">
src/main/java/org/broad/igv/feature/bionano/SMAPFeature.java
</a>
</li>
<li class="file-stats">
<a href="#90515fef2e914ccdf877f58eb5232484e9ab6bb8">
src/main/java/org/broad/igv/feature/bionano/SMAPPairedFeature.java
</a>
</li>
<li class="file-stats">
<a href="#86f335051a3eba27c84b7d4adaf9b8102f52cfc1">
src/main/java/org/broad/igv/feature/dranger/DRangerFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e083980ada6570e812fb156758b4fa99992936eb">
src/main/java/org/broad/igv/feature/genome/GenomeBuilderDialog.java
</a>
</li>
<li class="file-stats">
<a href="#5f710d137fc522f2e5aa5736d4b2c36dfde1d759">
src/main/java/org/broad/igv/feature/genome/load/JsonGenomeLoader.java
</a>
</li>
<li class="file-stats">
<a href="#bd5d11791c450c1ecc67298d957246b77912ec46">
src/main/java/org/broad/igv/feature/tribble/PAFFeature.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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