<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1">85e56923</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-05-31T20:51:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.13.0+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f21a02492456af68e10747392c75b747fe8656ee">
src/main/java/org/broad/igv/aws/S3LoadDialog.java
</a>
</li>
<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045">
src/main/java/org/broad/igv/batch/CommandExecutor.java
</a>
</li>
<li class="file-stats">
<a href="#3a01485c702a4253b186c11a8e8432e6098f26d3">
src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
→
src/main/java/org/broad/igv/bbfile/BBDataSource.java
</a>
</li>
<li class="file-stats">
<a href="#f8dc67b3f016bf665516355e56e983e310eeff37">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/BBUtils.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ed22943a67385843d51c6b1804b7922c7a1396f">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9865d43e6b2498132950359687d020553e62c61">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#ecaa31983fc5b2f8462b17d2a247e83b0493c89a">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7422da2673d5eb8f757380e3ab97647e7af6ef1">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ada7810b33e59ab34997d66ace9b0787077e165">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f0f4375068395e83977536f822c845c8b64e9c54">
src/main/java/org/broad/igv/blast/BlastMapping.java
</a>
</li>
<li class="file-stats">
<a href="#4fa7e6a9fa80783e181ca7eb76bc773e372468f4">
src/main/java/org/broad/igv/feature/AbstractFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e6d85bc27a3b3cc7ce4513e762b923fcef1803d3">
src/main/java/org/broad/igv/feature/BasicFeature.java
</a>
</li>
<li class="file-stats">
<a href="#f2e2e11252ea2deaca0ccff924082979bf5d37df">
src/main/java/org/broad/igv/feature/Exon.java
</a>
</li>
<li class="file-stats">
<a href="#7f7e50a2c9b33428ef305a630511510e0425afde">
src/main/java/org/broad/igv/feature/FeatureUtils.java
</a>
</li>
<li class="file-stats">
<a href="#fc0db6069d4f73a026472a5b6c9f7b79af642131">
src/main/java/org/broad/igv/feature/IGVFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e9196110bc3184aedf852063f44f30ccc58d368f">
src/main/java/org/broad/igv/feature/Mutation.java
</a>
</li>
<li class="file-stats">
<a href="#c32ebd7fa40a7e1e5049b829990ef84e8ac60702">
src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e946c0fc6e433a2dd8745e71f7ce3fce4b33a10f">
src/main/java/org/broad/igv/feature/UCSCSnpFeature.java
</a>
</li>
<li class="file-stats">
<a href="#f5e372e60065509088e6169254ddc3453576aaa2">
src/main/java/org/broad/igv/feature/bionano/SMAPFeature.java
</a>
</li>
<li class="file-stats">
<a href="#90515fef2e914ccdf877f58eb5232484e9ab6bb8">
src/main/java/org/broad/igv/feature/bionano/SMAPPairedFeature.java
</a>
</li>
<li class="file-stats">
<a href="#86f335051a3eba27c84b7d4adaf9b8102f52cfc1">
src/main/java/org/broad/igv/feature/dranger/DRangerFeature.java
</a>
</li>
<li class="file-stats">
<a href="#e083980ada6570e812fb156758b4fa99992936eb">
src/main/java/org/broad/igv/feature/genome/GenomeBuilderDialog.java
</a>
</li>
<li class="file-stats">
<a href="#5f710d137fc522f2e5aa5736d4b2c36dfde1d759">
src/main/java/org/broad/igv/feature/genome/load/JsonGenomeLoader.java
</a>
</li>
<li class="file-stats">
<a href="#bd5d11791c450c1ecc67298d957246b77912ec46">
src/main/java/org/broad/igv/feature/tribble/PAFFeature.java
</a>
</li>
<li class="file-stats">
<a href="#d7b2e95945e2084f61a7887b8bcf762662170666">
<span class="deleted-file">
−
src/main/java/org/broad/igv/feature/tribble/VCFFeature.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#af60cb6649f656e11c93c49ebba7bd4c5d1f12cf">
src/main/java/org/broad/igv/google/OAuthProvider.java
</a>
</li>
<li class="file-stats">
<a href="#2d4889f0da18b274f1e4fca39300bb0ec0a3ed4d">
src/main/java/org/broad/igv/google/OAuthUtils.java
</a>
</li>
<li class="file-stats">
<a href="#810ee550edf61a5876dec4f1885ef841531acfb2">
src/main/java/org/broad/igv/gwas/EQTLFeature.java
</a>
</li>
<li class="file-stats">
<a href="#1fe0a240419f6f73f9093deddb868bf25b4cf7b5">
src/main/java/org/broad/igv/gwas/GWASParser.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1"}}</script>
</p>
</div>
</body>
</html>