<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Tomasz Buchert pushed to branch master
at <a href="https://salsa.debian.org/med-team/mothur" style="color: #1068bf; text-decoration: none;">Debian Med / mothur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/980808ccf5fe69485267fc783c9ff60e64250de6" style="color: #1068bf; text-decoration: none;">980808cc</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2021-03-27T11:43:26+01:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 1.45.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/10a09b2fa3ec249a244c62c1c332939ad3c1595e" style="color: #1068bf; text-decoration: none;">10a09b2f</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2022-06-20T13:56:15+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 1.48.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/c52183dc8509c8b5726c79cef1fc4e66b56db4e9" style="color: #1068bf; text-decoration: none;">c52183dc</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2022-06-20T13:56:22+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/1.48.0'
Update to upstream version '1.48.0'
with Debian dir 5d4b4d3552f6cebe1561be8678891457c918c173</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/bd1ff8d9ff23a17fe578fbb9cfa595b1a3e7427a" style="color: #1068bf; text-decoration: none;">bd1ff8d9</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2022-06-20T13:57:07+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/4e40a51a40ed67936becb8196d0199fcdf67da6c" style="color: #1068bf; text-decoration: none;">4e40a51a</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2022-06-20T13:59:07+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>release
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#21fa5596c2ccf7b6a79604a7e7d71acab8a9a2f1" style="color: #1068bf; text-decoration: none;">
CITATION.md
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf; text-decoration: none;">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8b67dc09b93b38e95da2a54036fa1db5b207cc5b" style="color: #1068bf; text-decoration: none;">
Mothur.xcodeproj/project.pbxproj
</a>
</li>
<li class="file-stats">
<a href="#fc1b3bace89dd7d1ba88a340974edb0e8c817943" style="color: #1068bf; text-decoration: none;">
TestBatches/README
</a>
</li>
<li class="file-stats">
<a href="#2fe7c047e00ce014cf046e138b724e3a1044247b" style="color: #1068bf; text-decoration: none;">
TestBatches/align.seqs/batch
</a>
</li>
<li class="file-stats">
<a href="#9c332d2181693d4af85ff43a869121dc8b213509" style="color: #1068bf; text-decoration: none;">
TestBatches/classify.seqs/batch
</a>
</li>
<li class="file-stats">
<a href="#4afb5b0820d006db9e22538b02cd4c014c720efe" style="color: #1068bf; text-decoration: none;">
TestBatches/make.contigs/batch
</a>
</li>
<li class="file-stats">
<a href="#3f58f0bdd4736929491a8708187b27af632ab81e" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
TestBatches/stability.batch
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6c828e7e51e11564f497a73c585aa61869f88ff" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
TestBatches/stability.part2.batch
</span>
</a>
</li>
<li class="file-stats">
<a href="#55df42ebbdfe42722f888b54a921036e0b83b007" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
TestBatches/translate.seqs/batch
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b398e4acb05d358b35c7b717891ce87ac6a53bd" style="color: #1068bf; text-decoration: none;">
Ubuntu_20_Build.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#29a278f4dc70b0ebc3d910bd830a8fab4258f7a7" style="color: #1068bf; text-decoration: none;">
debian/patches/0002-Fix-include.patch
</a>
</li>
<li class="file-stats">
<a href="#ce8311c42636988878839c9b634efc3ceb190d7e" style="color: #1068bf; text-decoration: none;">
debian/patches/c++14.patch
</a>
</li>
<li class="file-stats">
<a href="#fc6d264550d6fb30f68fdcfdf1a8d058a6ff93dd" style="color: #1068bf; text-decoration: none;">
debian/patches/drop_sys_sysctl.h.patch
</a>
</li>
<li class="file-stats">
<a href="#cf39ab68d9d81e8ea74886f9556a67f049e65150" style="color: #1068bf; text-decoration: none;">
debian/patches/fix_linking.patch
</a>
</li>
<li class="file-stats">
<a href="#c380dd360f216fd789904f2794009be1ce992d4b" style="color: #1068bf; text-decoration: none;">
debian/patches/gcc-11.patch
</a>
</li>
<li class="file-stats">
<a href="#3b5389b41bae35f207850a8e95425fe4ba792259" style="color: #1068bf; text-decoration: none;">
makefile-internal
</a>
</li>
<li class="file-stats">
<a href="#b6a443ca5a5ac19bc4788a8840cf312e8569c88e" style="color: #1068bf; text-decoration: none;">
source/alignreport.cpp
</a>
</li>
<li class="file-stats">
<a href="#bb372f0c913f4b4604778de6af9b44ae81f60f40" style="color: #1068bf; text-decoration: none;">
source/alignreport.hpp
</a>
</li>
<li class="file-stats">
<a href="#96fbd34c93a37c236dfcc26741e81b62e3ac89ed" style="color: #1068bf; text-decoration: none;">
source/calcsparcc.cpp
</a>
</li>
<li class="file-stats">
<a href="#75a901c9e8f788e5e24e6b0d6ce2fc382548d0d1" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
source/calculators/README.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#cc02ccabb83842cbf73868a1dca19cd75f1c82a6" style="color: #1068bf; text-decoration: none;">
source/calculators/calculator.h
</a>
</li>
<li class="file-stats">
<a href="#7fa68c77647ef3831dcce9288a3d060db6c9e0ef" style="color: #1068bf; text-decoration: none;">
source/calculators/diversitycalc.h
</a>
</li>
<li class="file-stats">
<a href="#532ad27d948d65d09d7586a791710402022f1d7d" style="color: #1068bf; text-decoration: none;">
source/calculators/diversityutils.cpp
</a>
</li>
<li class="file-stats">
<a href="#fce9a30fccd414c0aae8c6b88c394d67fa99f7b1" style="color: #1068bf; text-decoration: none;">
source/calculators/igrarefaction.cpp
</a>
</li>
<li class="file-stats">
<a href="#f2334fff43e22255b485ff47f717f2321f0232d8" style="color: #1068bf; text-decoration: none;">
source/calculators/igrarefaction.hpp
</a>
</li>
<li class="file-stats">
<a href="#2cce5f5a18c42cf040967e90a4a2be8add6e9e53" style="color: #1068bf; text-decoration: none;">
source/calculators/lnrarefaction.cpp
</a>
</li>
<li class="file-stats">
<a href="#670f901f7a80fbbcaaf32d6be1c05e6895c96fd4" style="color: #1068bf; text-decoration: none;">
source/calculators/lsrarefaction.cpp
</a>
</li>
<li class="file-stats">
<a href="#773c7c27f407079c6ef5e7a664b483629c72ffd6" style="color: #1068bf; text-decoration: none;">
source/calculators/mcc.hpp
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/mothur/-/compare/ebaebd963f6f5a53d867f79f27b348ebc004f51d...4e40a51a40ed67936becb8196d0199fcdf67da6c" style="color: #1068bf; text-decoration: none;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>