<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>



<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake" style="color: #1068bf; text-decoration: none;">Debian Med / snakemake</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f9d8a43b818c95e6d57a4f85d29d7c3afdcec23c" style="color: #1068bf; text-decoration: none;">f9d8a43b</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T16:22:41+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 7.8.3</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/2dac335dcc3c9a56ca6f147b26f988d2d8681c37" style="color: #1068bf; text-decoration: none;">2dac335d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T16:22:41+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refresh/Rediff patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/077d5d6629dde3f22de94386a63d0e45038107d1" style="color: #1068bf; text-decoration: none;">077d5d66</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T16:22:41+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Remove changelog entry for a release that was never uploaded, merge prev changes in d/ch
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/3f9d514a606083b83fea725c031d55bb9370d90a" style="color: #1068bf; text-decoration: none;">3f9d514a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T18:07:19+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Embed retry python mod code and modify import path until python-retry is packaged
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/d0fe4ef34a55f68a851d8cf3262f17b070c6ed30" style="color: #1068bf; text-decoration: none;">d0fe4ef3</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T18:07:19+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Skip new unrunnable-in-Debian tests
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/7966f017aa4d3c5b69ba07e61bd60101c0116326" style="color: #1068bf; text-decoration: none;">7966f017</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T18:09:01+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Remove yte dep for now
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/db085a1adeb21cf4dadd1520bc25dcc268ba6410" style="color: #1068bf; text-decoration: none;">db085a1a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T18:09:01+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Mark tests offline even on timeouterror
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/cb61397dad884de611338cf58885516a558ff1a2" style="color: #1068bf; text-decoration: none;">cb61397d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-06-25T18:09:01+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7f9004ad0df1b6391abc998d9a153f9e763cbdd7" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/CODEOWNERS
</span>
</a>
</li>
<li class="file-stats">
<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/ISSUE_TEMPLATE/bug_report.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#67c0231b0ea83057a5f5c051eb28641a29af34a6" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/ISSUE_TEMPLATE/feature_request.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#99d2d4406193bf0dc3e7b84a6c9b9109997a4864" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/pull_request_template.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#fcc8b73a70c3f6bccb6382487e59d0069f657074" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/workflows/conventional-prs.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c5ee4afb3fab2334411b3025d137240676c72c3" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/workflows/docker-publish.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/workflows/main.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#40aac2d0a8a09ef6a80810a34d290c86c19a709e" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">

.github/workflows/release-please.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7" style="color: #1068bf; text-decoration: none;">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4" style="color: #1068bf; text-decoration: none;">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf; text-decoration: none;">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#9a1d15e694f16dad7c25d39b40a3fbc27764a816" style="color: #1068bf; text-decoration: none;">
debian/patches/0003-Compat-fix.patch
</a>
</li>
<li class="file-stats">
<a href="#6cbb5336bfa272ad2629f5ab1fabba4240e2114e" style="color: #1068bf; text-decoration: none;">
debian/patches/0008-remove_sphinx.ext.patch
</a>
</li>
<li class="file-stats">
<a href="#135ec01bd10e1ae371b58cf95c485e05336f96b4" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
debian/patches/cirumvent-retry.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#28b0709ae4054bc48d823b79dcfc13f75eccbb7e" style="color: #1068bf; text-decoration: none;">
debian/patches/fix_test_pytest.patch
</a>
</li>
<li class="file-stats">
<a href="#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803" style="color: #1068bf; text-decoration: none;">
debian/patches/local_javascript.patch
</a>
</li>
<li class="file-stats">
<a href="#c95b49fcdcf94cb632aec008933196e57cb26c3c" style="color: #1068bf; text-decoration: none;">
debian/patches/python2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69" style="color: #1068bf; text-decoration: none;">
debian/patches/python3.patch
</a>
</li>
<li class="file-stats">
<a href="#8f735a93bb087196e4fdf34f28d1de6782e8d849" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
debian/patches/remove-yte.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#aef4fc475d9c2698d0de9e80b3256895c791f41e" style="color: #1068bf; text-decoration: none;">
debian/patches/remove_ccbysa_snippets.patch
</a>
</li>
<li class="file-stats">
<a href="#87ba9cd7574dd1d01d72b7ceb5e99c2bc35089d1" style="color: #1068bf; text-decoration: none;">
debian/patches/reproducible-build.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96" style="color: #1068bf; text-decoration: none;">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#a4b0e78e8fe1547f2b9d33113b5e7108bcd2b4c6" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
debian/patches/skip-tests-with-internet.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#ff54e47f5e99b8693330287f0cde3307ea689e5d" style="color: #1068bf; text-decoration: none;">
debian/patches/test_from_any_directory.patch
</a>
</li>
<li class="file-stats">
<a href="#260fb267aa59c740952b443e87e306a192a8d82e" style="color: #1068bf; text-decoration: none;">
debian/patches/workaround_sphinx_issue.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67" style="color: #1068bf; text-decoration: none;">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f" style="color: #1068bf; text-decoration: none;">
docs/project_info/faq.rst
</a>
</li>
<li class="file-stats">
<a href="#945ec74fc1c17902d98bca84b7a1f0dfd755c01b" style="color: #1068bf; text-decoration: none;">
docs/snakefiles/deployment.rst
</a>
</li>
<li class="file-stats">
<a href="#678d7e50121966ef613372bf85b3e7f144e00ef1" style="color: #1068bf; text-decoration: none;">
docs/snakefiles/remote_files.rst
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">

<br>
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/8868dd08800b73e43660b0600da3fb1e4d12b4b1...cb61397dad884de611338cf58885516a558ff1a2" style="color: #1068bf; text-decoration: none;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.



</p>
</div>
</body>
</html>