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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanopolish" style="color: #1068bf; text-decoration: none;">Debian Med / nanopolish</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/c9c51e43898ed93ff1d189fbfb90f27a83e0753e" style="color: #1068bf; text-decoration: none;">c9c51e43</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:50:34+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 0.14.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/9918dd6cf7fc6ef946daa85628fec2999300a6ae" style="color: #1068bf; text-decoration: none;">9918dd6c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:50:34+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/a38f0b7a1bb4b299fca15a647f546ca1ae088ace" style="color: #1068bf; text-decoration: none;">a38f0b7a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:50:42+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/0.14.0'
Update to upstream version '0.14.0'
with Debian dir 8163ed3a3e31eabf8cae09aef5b0ecd4e4068cfc</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/3ec8889ad2840f401b163844ce68b495a6650bae" style="color: #1068bf; text-decoration: none;">3ec8889a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:50:42+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/bf54bd9e653ea8c76fce29506f24c7bd8aa599cf" style="color: #1068bf; text-decoration: none;">bf54bd9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:58:47+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Drop unneeded version constraint
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/b93f6a333a6ff0aa29116db68fe1c6a586ac7223" style="color: #1068bf; text-decoration: none;">b93f6a33</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:58:58+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/d81f080eed43ef64eb86a0e7561b803f7b8d1191" style="color: #1068bf; text-decoration: none;">d81f080e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T20:31:06+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>TODO: https://github.com/hasindu2008/slow5lib
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
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<a href="#86d2ca310d9edfd28b2ff37089f244cab7193ffc" style="color: #1068bf; text-decoration: none;">
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.github/workflows/nanopolish.yaml
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.gitmodules
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf; text-decoration: none;">
Makefile
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf; text-decoration: none;">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf; text-decoration: none;">
debian/control
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<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364" style="color: #1068bf; text-decoration: none;">
debian/patches/reproducible.patch
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<a href="#7f520b38bd378efdbd9aeba08b09335af8ea9050" style="color: #1068bf; text-decoration: none;">
debian/patches/staticMinimap2Library.patch
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<a href="#cfaaf015b890082873482ee5d8a3acf5d93ee4f3" style="color: #1068bf; text-decoration: none;">
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etc/htslib_config.h
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src/basemods/nanopolish_basemods.cpp
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<a href="#8e8eb434be532f08fed915a64027f0cc6b720f7c" style="color: #1068bf; text-decoration: none;">
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src/basemods/nanopolish_basemods.h
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<a href="#2c2d378f3c858273fcc789072d022d51957e8a98" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_alphabet.h
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<a href="#f8c90a47caede8a711c7db96f3d9177546e1d70a" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_bam_processor.cpp
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<a href="#45a2bcc01fb813f9245bb785a5bc3742f5eb9728" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_bam_processor.h
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<a href="#9102a0c62af6ff12a6d54fae93a06ce123bf52aa" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_common.cpp
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src/common/nanopolish_common.h
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<a href="#149ac5b0310ff017664f0645808befe6bda2ed83" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_variant.cpp
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<a href="#dd987838388d2c42ef5e4897eaef047ea34a4426" style="color: #1068bf; text-decoration: none;">
src/io/nanopolish_fast5_loader.cpp
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src/io/nanopolish_fast5_loader.h
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src/main/nanopolish.cpp
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src/nanopolish_call_methylation.cpp
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src/nanopolish_detect_polyi.cpp
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src/nanopolish_fast5_check.cpp
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src/nanopolish_polya_estimator.cpp
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
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